NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLH207
Library SL
(Link to library)
Clone ID SLH207
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11514-1
Original site URL
Representative seq. ID SLH207P
(Link to Original site)
Representative DNA sequence 
>SLH207 (SLH207Q) /CSM/SL/SLH2-A/SLH207Q.Seq.d/
AGATAAAAAAGCAATGGGTCTTGTAAATGCAAATGGTAAACAATTTAAAACTGCCAAAGG
TGCTCCACAAATCATTTTAAGAGAAGCTGATAATTACAAACAAGTTGGTGAAGCCGTTGA
AAAAGAAATTGAAAATCTTGCTGATCGTGGTTATCGTGCTTTGGGTGTTTCAGTCTCTTA
TGATGCACCAGACTTTAAGGTATGGCATTTCGAAGGTTTAATTCCACTCTTTGATCCACC
AAGACATGATACTGAGGATACCATCAAACGTGCACTCGAAATGGGTGTATCAGTTAAAAT
GATCACTGGTGATCAATTGGCTATTGCTAAAGAAACCGCAAGACGTTTAGGTATGGGTGG
TAATCTCTTTACTATTCCATATCTTGAAAACAATGATTTAGGTATCTCTGAAGGTGAAGT
CATTGAAATGGCTGACGGTTTCGCAGAAATGTGGCCAGAACACAAGTACAAAGTCGTAGA
TCAACTCCAAAAGAGAAAACATGTAGTTGGTATGACTGGTGATGGTGTTAATGATGCACC
AGCCTTAAAGAAAGCTCAAATTGGTATTGCTGTAGCAGGTGCTACCGATGCTGCTCGTTC
CGTCTCTGATATTGTCTTAACATCATCTGGTCTCTCTGTTATTATCGATGCAATTATCTC
ATCTCGTAAGATTTTCCAACGTATGAGAAXXXXXXXXXXTCTATTTAGTAGGTTCAACCA
TTGTATTCTTTGCAATCATTCATGATGGTACTTGGTTCCATGATGCTATCAATCTTCGTA
TCTTAACCGATAATGAACTTCGTGGTCTCATCTATCTTCAAGTCTCTATCTCTGGTCTTG
CAACTATTTTCGTATCACGTAGTCAAGGTTTCTCTTACTTTGAACGTCCAGGTAATCTTG
TAATCTTTGCTTTCGTTATGTCTCAAATTGTTGCTACCTTTATTGGTGTCTATGGTTTCC
GTGGTTATCCACATGATTCCTTTTCCGATAATCCAGATTATCCAGTACATGGTACAAATT
TCCAAGGTTGTGGTTGGGGTTGGGCTGTTTGTGCTTGGATTTGGTGTTTCCTTTGGTACA
TTCCAATGGATTTCATTAAATTAGGTGTCACCTATATTCTCCGTGGTAAGATTGAACCAA
TCAATAAAGATGCACTCCGTAAAATCTATGGTTGGTTTGGTAAAGAAATCCCAAAGGAAG
CAACTCAAGTCTCTCATAAAGTTGCTGAACAACAAGCTAAAAGAGATGCTTTACATGCAC
AAGAAACCCATCATAAATCTGTTGTTACCGATAATAAAGTTTAAAATAACAATAATATTT
AAATAATGTATAATAATTAGTTTTAATAATTTTATGCAACATAATAATATATAA
sequence update 1999. 2. 9
Translated Amino Acid sequence 
DKKAMGLVNANGKQFKTAKGAPQIILREADNYKQVGEAVEKEIENLADRGYRALGVSVSY
DAPDFKVWHFEGLIPLFDPPRHDTEDTIKRALEMGVSVKMITGDQLAIAKETARRLGMGG
NLFTIPYLENNDLGISEGEVIEMADGFAEMWPEHKYKVVDQLQKRKHVVGMTGDGVNDAP
ALKKAQIGIAVAGATDAARSVSDIVLTSSGLSVIIDAIISSRKIFQRMR---

---YLVGSTIVFFAIIHDGTWFHDAINLRILTDNELRGLIYLQVSISGLATIFVSRSQGF
SYFERPGNLVIFAFVMSQIVATFIGVYGFRGYPHDSFSDNPDYPVHGTNFQGCGWGWAVC
AWIWCFLWYIPMDFIKLGVTYILRGKIEPINKDALRKIYGWFGKEIPKEATQVSHKVAEQ
QAKRDALHAQETHHKSVVTDNKV*nnnni*imynn*f**fyat**yi
Translated Amino Acid sequence (All Frames) 
Frame A:
r*ksngsckckw*ti*ncqrcstnhfkrs**lqtsw*sr*krn*ksc*swlscfgcfsll
*ctrl*gmafrrfnstl*stkt*y*gyhqtctrngcis*ndhw*sigyc*rnrktfrygw
*slyysis*kq*fryl*r*sh*ng*rfrrnvartqvqsrrstpkektcswydw*wc**ct
slkessnwyccsrcyrccsfrl*yclniiwslcyyrcnylis*dfptye---

---si**vqplyslqsfmmvlgsmmlsifvs*pimnfvvssifkslslvlqlfsyhvvkv
sltlnvqvil*sllslclklllpllvsmvsvvihmipfpiiqiiqymvqiskvvvgvglf
vlgfgvsfgtfqwisln*vspifsvvrlnqsikmhsvksmvglvkksqrkqlksliklln
nklkemlymhkkpiinlllpiikfkitiifk*ciiisfnnfmqhnni*

Frame B:
DKKAMGLVNANGKQFKTAKGAPQIILREADNYKQVGEAVEKEIENLADRGYRALGVSVSY
DAPDFKVWHFEGLIPLFDPPRHDTEDTIKRALEMGVSVKMITGDQLAIAKETARRLGMGG
NLFTIPYLENNDLGISEGEVIEMADGFAEMWPEHKYKVVDQLQKRKHVVGMTGDGVNDAP
ALKKAQIGIAVAGATDAARSVSDIVLTSSGLSVIIDAIISSRKIFQRMR---

---lfsrfnhcilcnhs*wylvp*cyqssylnr**tswshlssslylwscnyfrit*srf
lll*tsr*scnlcfryvsnccylywclwfpwlst*flfr*srlsstwykfprlwlglgcl
cldlvfplvhsngfh*irchlyspw*d*tnq*rctp*nlwlvw*rnpkgsnssls*sc*t
ts*krcftctrnps*iccyr**slk*q*ylnnv**lvliilcniiiy

Frame C:
ikkqwvl*mqmvnnlklpkvlhksf*ekliitnklvkplkkklkillivvivlwvfqslm
mhqtlrygiskv*fhslihqdmilripsnvhskwvyqlk*slvinwlllkkpqdv*vwvv
isllfhilktmi*vslkvkslkwltvsqkcgqntstks*inskrenm*lv*lvmvlmmhq
p*rklklvll*qvlpmllvpslils*hhlvslllsmqlshlvrfsnv*e---

---YLVGSTIVFFAIIHDGTWFHDAINLRILTDNELRGLIYLQVSISGLATIFVSRSQGF
SYFERPGNLVIFAFVMSQIVATFIGVYGFRGYPHDSFSDNPDYPVHGTNFQGCGWGWAVC
AWIWCFLWYIPMDFIKLGVTYILRGKIEPINKDALRKIYGWFGKEIPKEATQVSHKVAEQ
QAKRDALHAQETHHKSVVTDNKV*nnnni*imynn*f**fyat**yi
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLH207 (SLH207Q) /CSM/SL/SLH2-A/SLH207Q.Seq.d/                       2496   0.0
VSE676 (VSE676Q) /CSM/VS/VSE6-D/VSE676Q.Seq.d/                       1170   0.0
VHP712 (VHP712Q) /CSM/VH/VHP7-A/VHP712Q.Seq.d/                       1170   0.0
VHN640 (VHN640Q) /CSM/VH/VHN6-B/VHN640Q.Seq.d/                       1170   0.0
VHN486 (VHN486Q) /CSM/VH/VHN4-D/VHN486Q.Seq.d/                       1170   0.0
VHN420 (VHN420Q) /CSM/VH/VHN4-A/VHN420Q.Seq.d/                       1170   0.0
VHK831 (VHK831Q) /CSM/VH/VHK8-B/VHK831Q.Seq.d/                       1170   0.0
VHK622 (VHK622Q) /CSM/VH/VHK6-A/VHK622Q.Seq.d/                       1170   0.0
VHJ588 (VHJ588Q) /CSM/VH/VHJ5-D/VHJ588Q.Seq.d/                       1170   0.0
VHJ167 (VHJ167Q) /CSM/VH/VHJ1-C/VHJ167Q.Seq.d/                       1170   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU062013) Dictyostelium discoideum slug cDNA, clone SLH207.     1366   0.0    1
(X98286) D.discoideum mRNA for P-type ATPase.                    1326   0.0    2
(AU263289) Dictyostelium discoideum vegetative cDNA clone:VS...  1172   0.0    1
(AU039227) Dictyostelium discoideum slug cDNA, clone SLH207.     1172   0.0    1
(AU034189) Dictyostelium discoideum slug cDNA, clone SLC237.     1172   0.0    1
(BJ446236) Dictyostelium discoideum cDNA clone:ddv62h03, 3' ...  1172   0.0    1
(BJ445104) Dictyostelium discoideum cDNA clone:ddv58o10, 3' ...  1172   0.0    1
(BJ444931) Dictyostelium discoideum cDNA clone:ddv57l22, 3' ...  1172   0.0    1
(BJ444666) Dictyostelium discoideum cDNA clone:ddv57h06, 3' ...  1172   0.0    1
(BJ443271) Dictyostelium discoideum cDNA clone:ddv52n08, 3' ...  1172   0.0    1
dna update 2009. 5.31
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54679) RecName: Full=Probable plasma membrane ATPase;         ...   451   e-125
T30580(T30580) P-type ATPase - slime mold (Dictyostelium discoid...   440   e-122
D88424_1(D88424|pid:none) Cyanidium caldarium mRNA for plasma me...   266   1e-69
AP008209_5(AP008209|pid:none) Oryza sativa (japonica cultivar-gr...   248   4e-64
AC097277_16(AC097277|pid:none) Oryza sativa chromosome 3 BAC OSJ...   248   4e-64
AJ440000_1(AJ440000|pid:none) Oryza sativa (japonica cultivar-gr...   248   5e-64
(Q9SU58) RecName: Full=ATPase 4, plasma membrane-type;          ...   246   1e-63
D10207_1(D10207|pid:none) Oryza sativa OSA1 mRNA for H-ATPase, c...   246   1e-63
AY347715_1(AY347715|pid:none) Juglans regia plasma membrane H+-A...   246   2e-63
AJ271439_1(AJ271439|pid:none) Prunus persica mRNA for plasma mem...   245   2e-63
protein update 2009. 6. 4
PSORT 

 psg: 0.79  gvh: 0.23  alm: 0.25  top: 0.80  tms: 0.27  mit: 0.19  mip: 0.00
 nuc: 0.02  erl: 0.00  erm: 0.20  pox: 0.30  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 28.0 %: plasma membrane
	 24.0 %: endoplasmic reticulum
	 12.0 %: nuclear
	 12.0 %: vacuolar
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: cytoplasmic

>> prediction for SLH207 is pla
5' end seq. ID SLH207F
5' end seq. 
>SLH207F.Seq
AGATAAAAAAGCAATGGGTCTTGTAAATGCAAATGGTAAACAATTTAAAACTGCCAAAGG
TGCTCCACAAATCATTTTAAGAGAAGCTGATAATTACAAACAAGTTGGTGAAGCCGTTGA
AAAAGAAATTGAAAATCTTGCTGATCGTGGTTATCGTGCTTTGGGTGTTTCAGTCTCTTA
TGATGCACCAGACTTTAAGGTATGGCATTTCGAAGGTTTAATTCCACTCTTTGATCCACC
AAGACATGATACTGAGGATACCATCAAACGTGCACTCGAAATGGGTGTATCAGTTAAAAT
GATCACTGGTGATCAATTGGCTATTGCTAAAGAAACCGCAAGACGTTTAGGTATGGGTGG
TAATCTCTTTACTATTCCATATCTTGAAAACAATGATTTAGGTATCTCTGAAGGTGAAGT
CATTGAAATGGCTGACGGTTTCGCAGAAATGTGGCCAGAACACAAGTACAAAGTCGTAGA
TCAACTCCAAAAGAGAAAACATGTAGTTGGTATGACTGGTGATGGTGTTAATGATGCACC
AGCCTTAAAGAAAGCTCAAATTGGTATTGCTGTAGCAGGTGCTACCGATGCTGCTCGTTC
CGTCTCTGATATTGTCTTAACATCATCTGGTCTCTCTGTTATTATCGATGCAATTATCTC
ATCTCGTAAGATTTTCCAACGTATGAGAA----------
Length of 5' end seq. 689
3' end seq. ID SLH207Z
3' end seq. 
>SLH207Z.Seq
----------TCTATTTAGTAGGTTCAACCATTGTATTCTTTGCAATCATTCATGATGGT
ACTTGGTTCCATGATGCTATCAATCTTCGTATCTTAACCGATAATGAACTTCGTGGTCTC
ATCTATCTTCAAGTCTCTATCTCTGGTCTTGCAACTATTTTCGTATCACGTAGTCAAGGT
TTCTCTTACTTTGAACGTCCAGGTAATCTTGTAATCTTTGCTTTCGTTATGTCTCAAATT
GTTGCTACCTTTATTGGTGTCTATGGTTTCCGTGGTTATCCACATGATTCCTTTTCCGAT
AATCCAGATTATCCAGTACATGGTACAAATTTCCAAGGTTGTGGTTGGGGTTGGGCTGTT
TGTGCTTGGATTTGGTGTTTCCTTTGGTACATTCCAATGGATTTCATTAAATTAGGTGTC
ACCTATATTCTCCGTGGTAAGATTGAACCAATCAATAAAGATGCACTCCGTAAAATCTAT
GGTTGGTTTGGTAAAGAAATCCCAAAGGAAGCAACTCAAGTCTCTCATAAAGTTGCTGAA
CAACAAGCTAAAAGAGATGCTTTACATGCACAAGAAACCCATCATAAATCTGTTGTTACC
GATAATAAAGTTTAAAATAACAATAATATTTAAATAATGTATAATAATTAGTTTTAATAA
TTTTATGCAACATAATAATATATAA
Length of 3' end seq. 675
Connected seq. ID SLH207P
Connected seq. 
>SLH207P.Seq
AGATAAAAAAGCAATGGGTCTTGTAAATGCAAATGGTAAACAATTTAAAACTGCCAAAGG
TGCTCCACAAATCATTTTAAGAGAAGCTGATAATTACAAACAAGTTGGTGAAGCCGTTGA
AAAAGAAATTGAAAATCTTGCTGATCGTGGTTATCGTGCTTTGGGTGTTTCAGTCTCTTA
TGATGCACCAGACTTTAAGGTATGGCATTTCGAAGGTTTAATTCCACTCTTTGATCCACC
AAGACATGATACTGAGGATACCATCAAACGTGCACTCGAAATGGGTGTATCAGTTAAAAT
GATCACTGGTGATCAATTGGCTATTGCTAAAGAAACCGCAAGACGTTTAGGTATGGGTGG
TAATCTCTTTACTATTCCATATCTTGAAAACAATGATTTAGGTATCTCTGAAGGTGAAGT
CATTGAAATGGCTGACGGTTTCGCAGAAATGTGGCCAGAACACAAGTACAAAGTCGTAGA
TCAACTCCAAAAGAGAAAACATGTAGTTGGTATGACTGGTGATGGTGTTAATGATGCACC
AGCCTTAAAGAAAGCTCAAATTGGTATTGCTGTAGCAGGTGCTACCGATGCTGCTCGTTC
CGTCTCTGATATTGTCTTAACATCATCTGGTCTCTCTGTTATTATCGATGCAATTATCTC
ATCTCGTAAGATTTTCCAACGTATGAGAA----------TCTATTTAGTAGGTTCAACCA
TTGTATTCTTTGCAATCATTCATGATGGTACTTGGTTCCATGATGCTATCAATCTTCGTA
TCTTAACCGATAATGAACTTCGTGGTCTCATCTATCTTCAAGTCTCTATCTCTGGTCTTG
CAACTATTTTCGTATCACGTAGTCAAGGTTTCTCTTACTTTGAACGTCCAGGTAATCTTG
TAATCTTTGCTTTCGTTATGTCTCAAATTGTTGCTACCTTTATTGGTGTCTATGGTTTCC
GTGGTTATCCACATGATTCCTTTTCCGATAATCCAGATTATCCAGTACATGGTACAAATT
TCCAAGGTTGTGGTTGGGGTTGGGCTGTTTGTGCTTGGATTTGGTGTTTCCTTTGGTACA
TTCCAATGGATTTCATTAAATTAGGTGTCACCTATATTCTCCGTGGTAAGATTGAACCAA
TCAATAAAGATGCACTCCGTAAAATCTATGGTTGGTTTGGTAAAGAAATCCCAAAGGAAG
CAACTCAAGTCTCTCATAAAGTTGCTGAACAACAAGCTAAAAGAGATGCTTTACATGCAC
AAGAAACCCATCATAAATCTGTTGTTACCGATAATAAAGTTTAAAATAACAATAATATTT
AAATAATGTATAATAATTAGTTTTAATAATTTTATGCAACATAATAATATATAA
Length of connected seq. 1364
Full length Seq ID -
Full length Seq. -
Length of full length seq. -