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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLH204
Library SL
(Link to library)
Clone ID SLH204
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15479-1
Original site URL
Representative seq. ID SLH204Z
(Link to Original site)
Representative DNA sequence 
>SLH204 (SLH204Q) /CSM/SL/SLH2-A/SLH204Q.Seq.d/
XXXXXXXXXXGTGCCCCAGCTAAAGCAGGTGTTTTCGCTCCAAACGATGTTATCATCCCA
GCCGGTCCAACTGGTATGGAACCAACCCAAACCTCTTTCCTCCAAGATTTAAAGATTGCC
ACTAAAATCAACAGAGGTCAAATCGATATCGTCAATGAAGTCCACATCATTAAAACCGGT
CAAAAAGTTGGTGCCTCAGAAGCTACCCTCTTACAAAAATTGAACATCAAACCATTCACC
TATGGTTTAGAACCAAAAATCATCTATGATGCTGGTGCCTGTTATTCACCATCTATCTCT
GAAGAAGATCTCATCAACAAATTCAAACAAGGTATCTTCAACATTGCTGCCATCTCCTTG
GAAATTGGTTACCCAACCGTTGCTTCAATTCCACATTCAGTCATGAATGCTTTCAAGAAT
TTATTAGCCATCTCATTCGAAACCTCTTACACTTTCGATGCTGCTGAAAAATTCAAATCA
GCCGCTGCTGCTGCCCCAGTTGCTGCCGCTCCATCCGCTGCTGCTCCAGCTGCCGCTGCC
AAGAAAGTCGTCGTCGAAGAAAAGAAAGAAGAATCAGATGATGATATGGGTATGGGTCTC
TTTGATTAAGATTTGAATAAATAAATTTTTTTTTTCAAAAAACATCAAAAAAAAATAAAA
AAAAAAA
sequence update 1998. 7. 2
Translated Amino Acid sequence 
---APAKAGVFAPNDVIIPAGPTGMEPTQTSFLQDLKIATKINRGQIDIVNEVHIIKTGQ
KVGASEATLLQKLNIKPFTYGLEPKIIYDAGACYSPSISEEDLINKFKQGIFNIAAISLE
IGYPTVASIPHSVMNAFKNLLAISFETSYTFDAAEKFKSAAAAAPVAAAPSAAAPAAAAK
KVVVEEKKEESDDDMGMGLFD*dlnk*ifffkkhqkkikkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---cps*srcfrskrcyhpsrsnwygtnpnlfpprfkdch*nqqrsnryrq*sphh*nrs
kswclrsypltkiehqtihlwfrtknhl*cwcllftiyl*rrshqqiqtrylqhcchllg
nwlpnrcfnstfshecfqefishlirnllhfrcc*kiqisrcccpsccrsirccsscrcq
esrrrrkerrir**ygygsl*lrfe*infffqktskknkkk


Frame B:
---APAKAGVFAPNDVIIPAGPTGMEPTQTSFLQDLKIATKINRGQIDIVNEVHIIKTGQ
KVGASEATLLQKLNIKPFTYGLEPKIIYDAGACYSPSISEEDLINKFKQGIFNIAAISLE
IGYPTVASIPHSVMNAFKNLLAISFETSYTFDAAEKFKSAAAAAPVAAAPSAAAPAAAAK
KVVVEEKKEESDDDMGMGLFD*dlnk*ifffkkhqkkikkk


Frame C:
---pqlkqvfslqtmlssqpvqlvwnqpkplsski*rlplkstevksissmkstslkpvk
klvpqklpsykn*tsnhspmv*nqkssmmlvpvihhlslkkisstnsnkvsstllpspwk
lvtqpllqfhiqs*mlsriy*pshskpltlsmllknsnqplllpqllplhplllqlplpr
kssskkrkknqmmiwvwvsliki*inkfffsknikkk*kkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFL888 (VFL888Q) /CSM/VF/VFL8-D/VFL888Q.Seq.d/                        932   0.0
VFK873 (VFK873Q) /CSM/VF/VFK8-D/VFK873Q.Seq.d/                        932   0.0
VFJ633 (VFJ633Q) /CSM/VF/VFJ6-B/VFJ633Q.Seq.d/                        932   0.0
VFH753 (VFH753Q) /CSM/VF/VFH7-C/VFH753Q.Seq.d/                        932   0.0
VFH730 (VFH730Q) /CSM/VF/VFH7-B/VFH730Q.Seq.d/                        932   0.0
VFG702 (VFG702Q) /CSM/VF/VFG7-A/VFG702Q.Seq.d/                        932   0.0
VFF854 (VFF854Q) /CSM/VF/VFF8-C/VFF854Q.Seq.d/                        932   0.0
VFF848 (VFF848Q) /CSM/VF/VFF8-B/VFF848Q.Seq.d/                        932   0.0
VFE158 (VFE158Q) /CSM/VF/VFE1-C/VFE158Q.Seq.d/                        932   0.0
VFD767 (VFD767Q) /CSM/VF/VFD7-C/VFD767Q.Seq.d/                        932   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU039226) Dictyostelium discoideum slug cDNA, clone SLH204.      930   0.0    2
(AU039931) Dictyostelium discoideum slug cDNA, clone SLG773.      930   0.0    2
(AU284336) Dictyostelium discoideum gamete cDNA clone:FC-AM2...   930   0.0    2
(X56194) D. discoideum mRNA for ribosomal acidic phosphoprot...   930   0.0    2
(AU285053) Dictyostelium discoideum gamete cDNA clone:FCL-AC...   918   0.0    2
(AU284494) Dictyostelium discoideum gamete cDNA clone:FC-AZ1...   906   0.0    2
(BJ433721) Dictyostelium discoideum cDNA clone:ddv22b20, 3' ...   930   0.0    3
(BJ428577) Dictyostelium discoideum cDNA clone:ddv12p12, 3' ...   930   0.0    2
(BJ428629) Dictyostelium discoideum cDNA clone:ddv12l14, 3' ...   930   0.0    2
(AU285011) Dictyostelium discoideum gamete cDNA clone:FC-BT0...   908   0.0    2
dna update 2009. 5.31
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

R5DOP0(S14012) ribosomal protein P0 - slime mold (Dictyostelium ...   295   6e-79
(P22685) RecName: Full=60S acidic ribosomal protein P0;               295   6e-79
AY857422_1(AY857422|pid:none) Suberites domuncula L10e/P0 mRNA, ...   186   4e-46
EU069460_1(EU069460|pid:none) Stylophora pistillata 60S acidic r...   176   5e-43
AY217739_1(AY217739|pid:none) Toxoplasma gondii ribosomal P prot...   174   2e-42
DQ516397_1(DQ516397|pid:none) Strongyloides ratti acidic ribosom...   172   8e-42
AY072284_1(AY072284|pid:none) Spodoptera frugiperda 60S acidic r...   172   1e-41
AJ457827_1(AJ457827|pid:none) Bombyx mori mRNA for ribosomal P0 ...   171   2e-41
AF390866_1(AF390866|pid:none) Toxoplasma gondii ribosomal phosph...   171   2e-41
DQ066213_1(DQ066213|pid:none) Ixodes scapularis isolate ISUFL22 ...   171   2e-41
protein update 2009. 6. 4
PSORT 

 psg: 0.72  gvh: 0.27  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.12  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 40.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SLH204 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLH204Z
3' end seq. 
>SLH204Z.Seq
----------GTGCCCCAGCTAAAGCAGGTGTTTTCGCTCCAAACGATGTTATCATCCCA
GCCGGTCCAACTGGTATGGAACCAACCCAAACCTCTTTCCTCCAAGATTTAAAGATTGCC
ACTAAAATCAACAGAGGTCAAATCGATATCGTCAATGAAGTCCACATCATTAAAACCGGT
CAAAAAGTTGGTGCCTCAGAAGCTACCCTCTTACAAAAATTGAACATCAAACCATTCACC
TATGGTTTAGAACCAAAAATCATCTATGATGCTGGTGCCTGTTATTCACCATCTATCTCT
GAAGAAGATCTCATCAACAAATTCAAACAAGGTATCTTCAACATTGCTGCCATCTCCTTG
GAAATTGGTTACCCAACCGTTGCTTCAATTCCACATTCAGTCATGAATGCTTTCAAGAAT
TTATTAGCCATCTCATTCGAAACCTCTTACACTTTCGATGCTGCTGAAAAATTCAAATCA
GCCGCTGCTGCTGCCCCAGTTGCTGCCGCTCCATCCGCTGCTGCTCCAGCTGCCGCTGCC
AAGAAAGTCGTCGTCGAAGAAAAGAAAGAAGAATCAGATGATGATATGGGTATGGGTCTC
TTTGATTAAGATTTGAATAAATAAATTTTTTTTTTCAAAAAACATCAAAAAAAAATAAAA
AAAAAAA
Length of 3' end seq. 657
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -