SLH202
Library SL
(Link to library)
Clone ID SLH202
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U07944-1
Original site URL
Representative seq. ID SLH202F
(Link to Original site)
Representative DNA sequence
>SLH202 (SLH202Q) /CSM/SL/SLH2-A/SLH202Q.Seq.d/
CATTCATACATACCTACATACATACACATACATACATACATACACATACATACATACACA
TACATACACATACATACACATACATATATACACATACATACATACATAGACATACATTTT
AACATAAATTAAATTTGTTATAATTATATATTTATATATATATATATATATAXXXXXXXX
XX
sequence update 1999. 2. 9
Translated Amino Acid sequence
HSYIPTYIHIHTYIHIHTYTYIHIHTHTYIHIHTYIDIHFNIN*icynyifiyiyiy---


Translated Amino Acid sequence (All Frames)
Frame A:
HSYIPTYIHIHTYIHIHTYTYIHIHTHTYIHIHTYIDIHFNIN*icynyifiyiyiy---


Frame B:
ihtylhtytyihtytyihthtytyihihiytyiht*tyilt*ikfviiiylyiyiy---


Frame C:
fihtyihthtyihthtyihihthtytyiythtyihrhtf*hklnll*lyiyiyiyi---


Homology vs CSM-cDNA

***** No hits found ******

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 0
Number of Sequences: 97611
Number of extensions: 0
Number of successful extensions: 0
Number of sequences better than 10.0: 0
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 0
length of query: 182
length of database: 80,480,566
effective HSP length: 17
effective length of query: 165
effective length of database: 78,821,179
effective search space: 13005494535
effective search space used: 13005494535
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)








Dictyostelium discoideum cDNA Project Home



own update 2009. 4. 4
Homology vs DNA

***** No hits found ******

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 0
Number of sequences better than 10.0: 0
Length of query: 182
Length of database: 101,790,757,118
Length adjustment: 22
Effective length of query: 160
Effective length of database: 99,544,435,898
Effective search space: 15927109743680
Effective search space used: 15927109743680
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)









Dictyostelium discoideum cDNA Project Home



dna update 2009. 5.31
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 7,746,027
protein update 2009. 6. 4
PSORT

psg: 0.82 gvh: 0.19 alm: 0.56 top: 0.53 tms: 0.00 mit: 0.34 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
36.0 %: nuclear
12.0 %: mitochondrial
8.0 %: cytoskeletal
4.0 %: peroxisomal

>> prediction for SLH202 is cyt

5' end seq. ID SLH202F
5' end seq.
>SLH202F.Seq
CATTCATACATACCTACATACATACACATACATACATACATACACATACATACATACACA
TACATACACATACATACACATACATATATACACATACATACATACATAGACATACATTTT
AACATAAATTAAATTTGTTATAATTATATATTTATATATATATATATATATA--------
--
Length of 5' end seq. 172
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -