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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLH171
Library SL
(Link to library)
Clone ID SLH171
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13857-1
Original site URL
Representative seq. ID SLH171P
(Link to Original site)
Representative DNA sequence 
>SLH171 (SLH171Q) /CSM/SL/SLH1-C/SLH171Q.Seq.d/
GCAATTCCATATCAAGTTTCAATATTAAGACCAGAAGATAAAACATATTGGAATGGTATA
TTACCAATTAGTGGAATGTTTATAAATTTATTGATTACACCAATATTTGGATATATTAGT
GATCATACAAAAACACCATTTGGAAGAAGAAGACCATATCTATTGGTTGGAACGATGATA
ATGATTATATTTTTATGTTTAGAGGCAACATTTGATCAACCATATCATTCAATTGGTGGA
TTTATTATAGTTTGTAGTGGTTATCAACTTGGTCAAGGTATTGCAGGTGGTGCATTCTCT
GGTATCATTCCAGATGTTGTACATCCTTCACAATCTGGTATTGCAAGTGGTTGGTTAGGT
GTTGGTTTTTCATTGGGTCTATTGATTGGTACAATTTTGTTTGGTACTTTATTAGAAGTG
AAAAATGTAATTCATACATGGTATTTGTATGGTGCAACCATTGCCTTCCTTGGTATTTCC
GCATTGATCACCATCTGTACAATGCATGAAGATTCTAATGATGAATGGTCATTCGATGGX
XXXXXXXXXTGTTGGTTATGGTGCTTATCAATGTGTTGATTGGGCATTGGCACTTCATTC
ATTACCAAATAAAACCATTGGCAAAGATATGGGTATTTGGCATATCTCTTTTATCGCTCC
AACTGTAGTTGCTCCAGCTATCACTGGTAGCATCTTACAAGCTACTCAAATTCCCCTTGA
AAATGGTACTAAAATTTCTTCACAATATGGTTATGCTATTGTTTTTGGTATTAGTTCATT
TTGGTTCCTTTTAGCAACAATCTTTATTTATCCAATGAAAATTAGTGCTATTCCAAAAAA
TTGTTCTAGAAAAGATCAACAACAACAAACTAATAATCAACAATCACAAAATCAACAACA
ATTACAACCAACTAATAATGGTGCTGATTTAAATAATCATAATAATGGTAAAGAAAACCC
AATAATAGAACCAGTTTAAATATTCTATTTTTAGATCAAAAAAAATC
sequence update 1999. 2. 9
Translated Amino Acid sequence 
AIPYQVSILRPEDKTYWNGILPISGMFINLLITPIFGYISDHTKTPFGRRRPYLLVGTMI
MIIFLCLEATFDQPYHSIGGFIIVCSGYQLGQGIAGGAFSGIIPDVVHPSQSGIASGWLG
VGFSLGLLIGTILFGTLLEVKNVIHTWYLYGATIAFLGISALITICTMHEDSNDEWSFD-
--

---VGYGAYQCVDWALALHSLPNKTIGKDMGIWHISFIAPTVVAPAITGSILQATQIPLE
NGTKISSQYGYAIVFGISSFWFLLATIFIYPMKISAIPKNCSRKDQQQQTNNQQSQNQQQ
LQPTNNGADLNNHNNGKENPIIEPV*ifyf*ikkn
Translated Amino Acid sequence (All Frames) 
Frame A:
AIPYQVSILRPEDKTYWNGILPISGMFINLLITPIFGYISDHTKTPFGRRRPYLLVGTMI
MIIFLCLEATFDQPYHSIGGFIIVCSGYQLGQGIAGGAFSGIIPDVVHPSQSGIASGWLG
VGFSLGLLIGTILFGTLLEVKNVIHTWYLYGATIAFLGISALITICTMHEDSNDEWSFD-
--

---cwlwclsmc*lgigtsfitk*nhwqrygylaylfyrsncscssyhw*hltsysnsp*
kwy*nfftiwlcycfwy*filvpfsnnlylsnen*cyskklf*krstttn**stitkstt
ittn**wc*fk*s**w*rkpnnrtslnilfldqkk

Frame B:
qfhikfqy*dqkikhigmvyyqlvecl*iy*lhqyldilviiqkhhleeedhiywler**
*lyfyv*rqhlinhiiqlvdll*fvvvinlvkvlqvvhslvsfqmlyilhnlvlqvvg*v
lvfhwvy*lvqfclvly*k*km*fihgicmvqplpslvfph*spsvqcmkilmmnghsm-
--

---VGYGAYQCVDWALALHSLPNKTIGKDMGIWHISFIAPTVVAPAITGSILQATQIPLE
NGTKISSQYGYAIVFGISSFWFLLATIFIYPMKISAIPKNCSRKDQQQQTNNQQSQNQQQ
LQPTNNGADLNNHNNGKENPIIEPV*ifyf*ikkn

Frame C:
nsissfniktrr*nilewyitn*wnvykfidytniwiy**sykntiwkkktisigwnddn
dyifmfrgni*stisfnwwiyysl*wlstwsrycrwcilwyhsrcctsftiwyckwlvrc
wffigsidwynfvwyfirsekcnsymvfvwcnhclpwyfridhhlyna*rf***mvirw-
--

---lvmvlinvlighwhfihyqikplakiwvfgisllslql*llqlslvasykllkfplk
mvlkflhnmvmllflvlvhfgsf*qqslfiq*klvlfqkivlekinnnkliinnhkinnn
ynqlimvli*iiiimvkktq**nqfkysifrskki
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLH171 (SLH171Q) /CSM/SL/SLH1-C/SLH171Q.Seq.d/                       1917   0.0
SFK429 (SFK429Q) /CSM/SF/SFK4-B/SFK429Q.Seq.d/                       1068   0.0
AFG890 (AFG890Q) /CSM/AF/AFG8-D/AFG890Q.Seq.d/                       1068   0.0
AFF845 (AFF845Q) /CSM/AF/AFF8-B/AFF845Q.Seq.d/                       1033   0.0
SFK377 (SFK377Q) /CSM/SF/SFK3-D/SFK377Q.Seq.d/                        922   0.0
SSM685 (SSM685Q) /CSM/SS/SSM6-D/SSM685Q.Seq.d/                        880   0.0
SSM658 (SSM658Q) /CSM/SS/SSM6-C/SSM658Q.Seq.d/                        880   0.0
AFM487 (AFM487Q) /CSM/AF/AFM4-D/AFM487Q.Seq.d/                        880   0.0
SSJ230 (SSJ230Q) /CSM/SS/SSJ2-B/SSJ230Q.Seq.d/                        803   0.0
SFH450 (SFH450Q) /CSM/SF/SFH4-C/SFH450Q.Seq.d/                        751   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU062006) Dictyostelium discoideum slug cDNA, clone SLH171.     1065   0.0    1
(BJ390163) Dictyostelium discoideum cDNA clone:dds21j08, 5' ...  1065   0.0    1
(BJ325489) Dictyostelium discoideum cDNA clone:dda14d24, 5' ...  1065   0.0    1
(BJ323815) Dictyostelium discoideum cDNA clone:dda12j12, 5' ...  1029   0.0    1
(BJ390286) Dictyostelium discoideum cDNA clone:dds21j19, 5' ...   922   0.0    1
(BJ391189) Dictyostelium discoideum cDNA clone:dds15d14, 5' ...   747   0.0    1
(AU039218) Dictyostelium discoideum slug cDNA, clone SLH171.      563   0.0    2
(C93349) Dictyostelium discoideum slug cDNA, clone SSM658.        555   0.0    2
(C93151) Dictyostelium discoideum slug cDNA, clone SSM685.        555   0.0    2
(BJ347043) Dictyostelium discoideum cDNA clone:dda25n22, 3' ...   555   0.0    2
dna update 2009. 5.31
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A75444(A75444) hypothetical protein - Deinococcus radiodurans (s...    64   1e-08
CP000750_2517(CP000750|pid:none) Kineococcus radiotolerans SRS30...    62   2e-08
AM711867_115(AM711867|pid:none) Clavibacter michiganensis subsp....    61   7e-08
CP001013_802(CP001013|pid:none) Leptothrix cholodnii SP-6, compl...    59   2e-07
AE017221_1787(AE017221|pid:none) Thermus thermophilus HB27, comp...    57   1e-06
CP001618_3127(CP001618|pid:none) Beutenbergia cavernae DSM 12333...    55   3e-06
GM015171_216(GM015171|pid:none) Sequence 1 from Patent EP1923464.      55   5e-06
AJ248283_264(AJ248283|pid:none) Pyrococcus abyssi complete genom...    54   8e-06
CP000910_2140(CP000910|pid:none) Renibacterium salmoninarum ATCC...    54   1e-05
CP000582_143(CP000582|pid:none) Ostreococcus lucimarinus CCE9901...    52   3e-05
protein update 2009. 6. 4
PSORT 

 psg: 0.46  gvh: 0.52  alm: 0.24  top: 0.70  tms: 0.40  mit: 0.21  mip: 0.03
 nuc: 0.08  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 48.0 %: plasma membrane
	 16.0 %: endoplasmic reticulum
	 12.0 %: vacuolar
	  8.0 %: mitochondrial
	  8.0 %: nuclear
	  4.0 %: Golgi
	  4.0 %: cytoskeletal

>> prediction for SLH171 is pla
5' end seq. ID SLH171F
5' end seq. 
>SLH171F.Seq
GCAATTCCATATCAAGTTTCAATATTAAGACCAGAAGATAAAACATATTGGAATGGTATA
TTACCAATTAGTGGAATGTTTATAAATTTATTGATTACACCAATATTTGGATATATTAGT
GATCATACAAAAACACCATTTGGAAGAAGAAGACCATATCTATTGGTTGGAACGATGATA
ATGATTATATTTTTATGTTTAGAGGCAACATTTGATCAACCATATCATTCAATTGGTGGA
TTTATTATAGTTTGTAGTGGTTATCAACTTGGTCAAGGTATTGCAGGTGGTGCATTCTCT
GGTATCATTCCAGATGTTGTACATCCTTCACAATCTGGTATTGCAAGTGGTTGGTTAGGT
GTTGGTTTTTCATTGGGTCTATTGATTGGTACAATTTTGTTTGGTACTTTATTAGAAGTG
AAAAATGTAATTCATACATGGTATTTGTATGGTGCAACCATTGCCTTCCTTGGTATTTCC
GCATTGATCACCATCTGTACAATGCATGAAGATTCTAATGATGAATGGTCATTCGATGG-
---------
Length of 5' end seq. 539
3' end seq. ID SLH171Z
3' end seq. 
>SLH171Z.Seq
----------TGTTGGTTATGGTGCTTATCAATGTGTTGATTGGGCATTGGCACTTCATT
CATTACCAAATAAAACCATTGGCAAAGATATGGGTATTTGGCATATCTCTTTTATCGCTC
CAACTGTAGTTGCTCCAGCTATCACTGGTAGCATCTTACAAGCTACTCAAATTCCCCTTG
AAAATGGTACTAAAATTTCTTCACAATATGGTTATGCTATTGTTTTTGGTATTAGTTCAT
TTTGGTTCCTTTTAGCAACAATCTTTATTTATCCAATGAAAATTAGTGCTATTCCAAAAA
ATTGTTCTAGAAAAGATCAACAACAACAAACTAATAATCAACAATCACAAAATCAACAAC
AATTACAACCAACTAATAATGGTGCTGATTTAAATAATCATAATAATGGTAAAGAAAACC
CAATAATAGAACCAGTTTAAATATTCTATTTTTAGATCAAAAAAAATC
Length of 3' end seq. 458
Connected seq. ID SLH171P
Connected seq. 
>SLH171P.Seq
GCAATTCCATATCAAGTTTCAATATTAAGACCAGAAGATAAAACATATTGGAATGGTATA
TTACCAATTAGTGGAATGTTTATAAATTTATTGATTACACCAATATTTGGATATATTAGT
GATCATACAAAAACACCATTTGGAAGAAGAAGACCATATCTATTGGTTGGAACGATGATA
ATGATTATATTTTTATGTTTAGAGGCAACATTTGATCAACCATATCATTCAATTGGTGGA
TTTATTATAGTTTGTAGTGGTTATCAACTTGGTCAAGGTATTGCAGGTGGTGCATTCTCT
GGTATCATTCCAGATGTTGTACATCCTTCACAATCTGGTATTGCAAGTGGTTGGTTAGGT
GTTGGTTTTTCATTGGGTCTATTGATTGGTACAATTTTGTTTGGTACTTTATTAGAAGTG
AAAAATGTAATTCATACATGGTATTTGTATGGTGCAACCATTGCCTTCCTTGGTATTTCC
GCATTGATCACCATCTGTACAATGCATGAAGATTCTAATGATGAATGGTCATTCGATGG-
---------TGTTGGTTATGGTGCTTATCAATGTGTTGATTGGGCATTGGCACTTCATTC
ATTACCAAATAAAACCATTGGCAAAGATATGGGTATTTGGCATATCTCTTTTATCGCTCC
AACTGTAGTTGCTCCAGCTATCACTGGTAGCATCTTACAAGCTACTCAAATTCCCCTTGA
AAATGGTACTAAAATTTCTTCACAATATGGTTATGCTATTGTTTTTGGTATTAGTTCATT
TTGGTTCCTTTTAGCAACAATCTTTATTTATCCAATGAAAATTAGTGCTATTCCAAAAAA
TTGTTCTAGAAAAGATCAACAACAACAAACTAATAATCAACAATCACAAAATCAACAACA
ATTACAACCAACTAATAATGGTGCTGATTTAAATAATCATAATAATGGTAAAGAAAACCC
AATAATAGAACCAGTTTAAATATTCTATTTTTAGATCAAAAAAAATC
Length of connected seq. 997
Full length Seq ID -
Full length Seq. -
Length of full length seq. -