NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLH166
Library SL
(Link to library)
Clone ID SLH166
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16353-1
Original site URL
Representative seq. ID SLH166E
(Link to Original site)
Representative DNA sequence 
>SLH166 (SLH166Q) /CSM/SL/SLH1-C/SLH166Q.Seq.d/
CACTGTTAACATCCCAGATGGTGTCGATGGTAAAATGGTCATGAAATATCTTTTGGATAA
TTTCAATATTGAAATTGCTGGTGGTATTGGTGCTTTTGCTGGAAAAGTTTGGCGTATTGG
TTTGATGGGTCAAAATGCTAATCCAGGTAATATTAAATTATTAATTAGTTCATTATCTGA
TGCACTCAAAGTTAATGGTTTTAATTGTT
sequence update 1998. 6.30
Translated Amino Acid sequence 
TVNIPDGVDGKMVMKYLLDNFNIEIAGGIGAFAGKVWRIGLMGQNANPGNIKLLISSLSD
ALKVNGFNC
Translated Amino Acid sequence (All Frames) 
Frame A:
hc*hprwcrw*ngheisfg*fqy*ncwwywcfcwkslaywfdgskc*sr*y*iin*fii*
ctqs*wf*l


Frame B:
TVNIPDGVDGKMVMKYLLDNFNIEIAGGIGAFAGKVWRIGLMGQNANPGNIKLLISSLSD
ALKVNGFNC


Frame C:
lltsqmvsmvkws*nifwiisilkllvvlvlllekfgvlv*wvkmliqvilny*lvhylm
hsklmvliv
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSJ705 (SSJ705Q) /CSM/SS/SSJ7-A/SSJ705Q.Seq.d/                        414   e-115
SSJ704 (SSJ704Q) /CSM/SS/SSJ7-A/SSJ704Q.Seq.d/                        414   e-115
SSH113 (SSH113Q) /CSM/SS/SSH1-A/SSH113Q.Seq.d/                        414   e-115
SSF718 (SSF718Q) /CSM/SS/SSF7-A/SSF718Q.Seq.d/                        414   e-115
SSC860 (SSC860Q) /CSM/SS/SSC8-C/SSC860Q.Seq.d/                        414   e-115
SSB364 (SSB364Q) /CSM/SS/SSB3-C/SSB364Q.Seq.d/                        414   e-115
SLK619 (SLK619Q) /CSM/SL/SLK6-A/SLK619Q.Seq.d/                        414   e-115
SLI196 (SLI196Q) /CSM/SL/SLI1-D/SLI196Q.Seq.d/                        414   e-115
SLH166 (SLH166Q) /CSM/SL/SLH1-C/SLH166Q.Seq.d/                        414   e-115
SLC625 (SLC625Q) /CSM/SL/SLC6-B/SLC625Q.Seq.d/                        414   e-115
own update 2000. 8.28
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU053235) Dictyostelium discoideum slug cDNA, clone SLI196.      414   e-112  1
(AU039216) Dictyostelium discoideum slug cDNA, clone SLH166.      414   e-112  1
(AU037973) Dictyostelium discoideum slug cDNA, clone SSH113.      414   e-112  1
(AU034614) Dictyostelium discoideum slug cDNA, clone SLC625.      414   e-112  1
(C93961) Dictyostelium discoideum slug cDNA, clone SSC860.        414   e-112  1
(C92661) Dictyostelium discoideum slug cDNA, clone SSF718.        414   e-112  1
(C91019) Dictyostelium discoideum slug cDNA, clone SSJ705.        414   e-112  1
(C91018) Dictyostelium discoideum slug cDNA, clone SSJ704.        414   e-112  1
(C84238) Dictyostelium discoideum slug cDNA, clone SSB364.        414   e-112  1
(C83966) Dictyostelium discoideum slug cDNA, clone SLK619.        414   e-112  1
dna update 2009. 5.31
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54GT6) RecName: Full=Serine--pyruvate aminotransferase;       ...   115   5e-25
CP000806_2867(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu...    59   4e-08
CP001287_3638(CP001287|pid:none) Cyanothece sp. PCC 8801, comple...    58   9e-08
CP000509_3226(CP000509|pid:none) Nocardioides sp. JS614, complet...    58   1e-07
CP000474_3378(CP000474|pid:none) Arthrobacter aurescens TC1, com...    57   2e-07
AP008231_1934(AP008231|pid:none) Synechococcus elongatus PCC 630...    56   3e-07
CP000100_2158(CP000100|pid:none) Synechococcus elongatus PCC 794...    56   3e-07
CP000951_173(CP000951|pid:none) Synechococcus sp. PCC 7002, comp...    55   6e-07
CP000553_769(CP000553|pid:none) Prochlorococcus marinus str. NAT...    54   2e-06
CP000447_425(CP000447|pid:none) Shewanella frigidimarina NCIMB 4...    54   2e-06
protein update 2009. 7. 5
PSORT 

 psg: 0.75  gvh: 0.45  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 20.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for SLH166 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SLH166E
Full length Seq. 
>SLH166E.Seq
CACTGTTAACATCCCAGATGGTGTCGATGGTAAAATGGTCATGAAATATCTTTTGGATAA
TTTCAATATTGAAATTGCTGGTGGTATTGGTGCTTTTGCTGGAAAAGTTTGGCGTATTGG
TTTGATGGGTCAAAATGCTAATCCAGGTAATATTAAATTATTAATTAGTTCATTATCTGA
TGCACTCAAAGTTAATGGTTTTAATTGTT
Length of full length seq. 209