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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLH105
Library SL
(Link to library)
Clone ID SLH105
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16272-1
Original site URL
Representative seq. ID SLH105Z
(Link to Original site)
Representative DNA sequence 
>SLH105 (SLH105Q) /CSM/SL/SLH1-A/SLH105Q.Seq.d/
XXXXXXXXXXTACCAAGAAAGACCCATAAAGGTTTAAGAAAGGTTGCCTGTATTGGTGCA
TGGCATCCATCCCGTGTTAGTACCACCGTCCCAAGAGCTGGTCAACTCGGTTACCATCAT
CGTGTCGAAAGAAACAAGAAGATTTACAGAATCGGTCAAGCTCAACCAGAAGACGGTAAA
CAAATCTCAACCGGTAAGACTGAATTCGATTTAACTGAAAAGACTATCAATCCAATGGGT
GGTTTCGCTCACTACGGTATGGTTAAACATGAATTCTTAATGCTTAAAGGTTGTGTTGCT
GGTCCAAGAAAGAGAGCCTTAACCTTAAGAAAGAGTATCACCACTCAAACTGGTCGTGCT
GCCCTCGAGAAAATCACTCTCAAATTCATCGATACCTCCAGCAAGTTTGGTCACGGTCTT
CATCAAACCGCTGAAGATAAGACTAAATATTTCGGCGTCAAGAAATCAAGATCAACTAAG
GCTTAAATTCAATAAATTAGATTTCAGAGAGTTATCAAACATAATATAAAAAAAAAAAAA
AAA
sequence update 1998. 6.30
Translated Amino Acid sequence 
---PRKTHKGLRKVACIGAWHPSRVSTTVPRAGQLGYHHRVERNKKIYRIGQAQPEDGKQ
ISTGKTEFDLTEKTINPMGGFAHYGMVKHEFLMLKGCVAGPRKRALTLRKSITTQTGRAA
LEKITLKFIDTSSKFGHGLHQTAEDKTKYFGVKKSRSTKA*iq*irfqrvikhnikkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---tkkdp*rfkkgclywcmasipc*yhrpkswstrlpsscrkkqedlqnrssstrrr*t
nlnr*d*irfn*kdyqsngwfrslryg*t*ilna*rlccwskkeslnlkkeyhhsnwscc
prenhsqihrylqqvwsrsssnr*r*d*ifrrqeikin*glnsin*isesyqt*ykkkkk


Frame B:
---PRKTHKGLRKVACIGAWHPSRVSTTVPRAGQLGYHHRVERNKKIYRIGQAQPEDGKQ
ISTGKTEFDLTEKTINPMGGFAHYGMVKHEFLMLKGCVAGPRKRALTLRKSITTQTGRAA
LEKITLKFIDTSSKFGHGLHQTAEDKTKYFGVKKSRSTKA*iq*irfqrvikhnikkkkk


Frame C:
---qerpikv*erlpvlvhgihpvlvppsqelvnsvtiivsketrrftesvklnqktvnk
sqpvrlnsi*lkrlsiqwvvslttvwlnmns*clkvvllvqerep*p*ervsplklvvlp
srkslsnssippaslvtvfikplkirlnisasrnqdqlrlkfnkldfrelsnii*kkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFI645 (VFI645Q) /CSM/VF/VFI6-B/VFI645Q.Seq.d/                       1025   0.0
VFF813 (VFF813Q) /CSM/VF/VFF8-A/VFF813Q.Seq.d/                       1025   0.0
SLH735 (SLH735Q) /CSM/SL/SLH7-B/SLH735Q.Seq.d/                       1025   0.0
SLH105 (SLH105Q) /CSM/SL/SLH1-A/SLH105Q.Seq.d/                       1025   0.0
SLB430 (SLB430Q) /CSM/SL/SLB4-B/SLB430Q.Seq.d/                       1025   0.0
SLB755 (SLB755Q) /CSM/SL/SLB7-C/SLB755Q.Seq.d/                       1023   0.0
SLB122 (SLB122Q) /CSM/SL/SLB1-A/SLB122Q.Seq.d/                       1021   0.0
VSI163 (VSI163Q) /CSM/VS/VSI1-C/VSI163Q.Seq.d/                       1019   0.0
SLI226 (SLI226Q) /CSM/SL/SLI2-B/SLI226Q.Seq.d/                       1019   0.0
SLH858 (SLH858Q) /CSM/SL/SLH8-C/SLH858Q.Seq.d/                       1019   0.0
own update 2001.11.27
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU039411) Dictyostelium discoideum slug cDNA, clone SLH735.     1025   0.0    1
(AU039193) Dictyostelium discoideum slug cDNA, clone SLH105.     1025   0.0    1
(AU033780) Dictyostelium discoideum slug cDNA, clone SLB430.     1025   0.0    1
(BJ432325) Dictyostelium discoideum cDNA clone:ddv18i12, 3' ...  1025   0.0    1
(BJ428484) Dictyostelium discoideum cDNA clone:ddv12j04, 3' ...  1025   0.0    1
(AU034111) Dictyostelium discoideum slug cDNA, clone SLB755.     1023   0.0    1
(AU033517) Dictyostelium discoideum slug cDNA, clone SLB122.     1021   0.0    1
(AU268249) Dictyostelium discoideum vegetative cDNA clone:VS...  1019   0.0    1
(AU053247) Dictyostelium discoideum slug cDNA, clone SLI226.     1019   0.0    1
(AU053002) Dictyostelium discoideum slug cDNA, clone SLF493.     1019   0.0    1
dna update 2009. 5.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P34113) RecName: Full=60S ribosomal protein L3;  &JC4254(JC4254...   323   2e-87
BT070643_1(BT070643|pid:none) Picea sitchensis clone WS02742_A15...   213   2e-54
AM048985_1(AM048985|pid:none) Micromalthus debilis partial mRNA ...   212   6e-54
EU999182_1(EU999182|pid:none) Artemia franciscana ribosomal prot...   211   1e-53
EF070522_1(EF070522|pid:none) Maconellicoccus hirsutus clone WHM...   210   2e-53
BC158279_1(BC158279|pid:none) Xenopus tropicalis hypothetical pr...   210   2e-53
AJ720292_1(AJ720292|pid:none) Gallus gallus mRNA for hypothetica...   209   3e-53
AY395739_1(AY395739|pid:none) Nicotiana tabacum ribosomal protei...   208   8e-53
BT034517_1(BT034517|pid:none) Zea mays full-length cDNA clone ZM...   207   1e-52
BT036034_1(BT036034|pid:none) Zea mays full-length cDNA clone ZM...   207   1e-52
protein update 2009. 6. 4
PSORT 

 psg: 0.87  gvh: 0.43  alm: 0.51  top: 0.47  tms: 0.00  mit: 0.51  mip: 0.08
 nuc: 0.21  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: mitochondrial
	 20.0 %: cytoplasmic
	 20.0 %: nuclear
	  4.0 %: cytoskeletal

>> prediction for SLH105 is mit
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLH105Z
3' end seq. 
>SLH105Z.Seq
----------TACCAAGAAAGACCCATAAAGGTTTAAGAAAGGTTGCCTGTATTGGTGCA
TGGCATCCATCCCGTGTTAGTACCACCGTCCCAAGAGCTGGTCAACTCGGTTACCATCAT
CGTGTCGAAAGAAACAAGAAGATTTACAGAATCGGTCAAGCTCAACCAGAAGACGGTAAA
CAAATCTCAACCGGTAAGACTGAATTCGATTTAACTGAAAAGACTATCAATCCAATGGGT
GGTTTCGCTCACTACGGTATGGTTAAACATGAATTCTTAATGCTTAAAGGTTGTGTTGCT
GGTCCAAGAAAGAGAGCCTTAACCTTAAGAAAGAGTATCACCACTCAAACTGGTCGTGCT
GCCCTCGAGAAAATCACTCTCAAATTCATCGATACCTCCAGCAAGTTTGGTCACGGTCTT
CATCAAACCGCTGAAGATAAGACTAAATATTTCGGCGTCAAGAAATCAAGATCAACTAAG
GCTTAAATTCAATAAATTAGATTTCAGAGAGTTATCAAACATAATATAAAAAAAAAAAAA
AAA
Length of 3' end seq. 533
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -