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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLG867
Library SL
(Link to library)
Clone ID SLG867
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U10587-1|Contig-U16087-1
Original site URL
Representative seq. ID SLG867P
(Link to Original site)
Representative DNA sequence 
>SLG867 (SLG867Q) /CSM/SL/SLG8-C/SLG867Q.Seq.d/
AATTACAGCAACAACAGCAATTGAATGGTGTAACTCAGTCACCAACTCAATCGCCAATTA
AAAAGTATAATTCAATTGCTTCAAATGGTAATGGAGTTCATCATAACTCTTTAAATGGTT
CAATGAATCATTACCATCAGCAACAACAACACCAACACCATCATCACCATCATCACCATC
ATAATAATAATAATATGATTAGTAGTAGTGTCAATGGTACTACTTCAACCAACCCTTTAT
TACCACTACCATTGTCATCGACTACACATTCTTTATCAAAAAGTTTAAATGGTACTACAT
CAAGTGGTATTAACGATCTTCACCATCAACAACAACATATCTCGAATTATGGTCAATATT
TTGGAATGCCGAACTTTAATCAATCAGTTGATTTCAATCTTTCCTTTAATCATACCATCA
CCAATCTATCGAATCTTGATCTTCGTGGAATTAACATCTCTGATAATATTAATTCATCAT
CGAATAGTGGTTCAACTTCATCGAGTTCAATCACAACATCAAGTTTAAGTATAAATAATA
ATAXXXXXXXXXXATAATATCAACACCAACTTTACGAATCATTTACAAAATGGACTTTTC
AACGACGAATTAAGATATCTTTCCGAATTTAATGCTTCTTTGTTTGTTGTAAATAACAAT
AACATTAACAACAACAATAACAATAGCAATACCAATGGTTTTTCGAATTTTTCAACAACT
ACAAATGGCAATCATGATTTATTATCGCAGCCAGCTTTAAGCCATAATCACAATCAACAA
CAACATCACAACCTTCACCATCTTCATCATCAACATCATTATTTTGCAAGTAATCAAGAT
CCAGTTTATGTATCATCACCACCTGGTATCAATTCTTTTACACATTTTTCAAATTCTCCA
ATTTCAAATTTTAATAACAATTCTCCATTTTTCAAATCAAATCTTAATTAATTAATCAAT
TAATAATTATCGAGCGGATGTATATAAAATGTAAACAATAACTAATAACTAATAATAANN
NNNNNNNTAATAATAATAATAATAATGATAATTTATAATAATTAATAATAACAATTCTTT
TTTGTTTTGTTTGTGATTTTTTATCCTTTAATTTACTTTCCAAGA
sequence update 1999. 2. 9
Translated Amino Acid sequence 
LQQQQQLNGVTQSPTQSPIKKYNSIASNGNGVHHNSLNGSMNHYHQQQQHQHHHHHHHHH
NNNNMISSSVNGTTSTNPLLPLPLSSTTHSLSKSLNGTTSSGINDLHHQQQHISNYGQYF
GMPNFNQSVDFNLSFNHTITNLSNLDLRGINISDNINSSSNSGSTSSSSITTSSLSINNN
---

---NINTNFTNHLQNGLFNDELRYLSEFNASLFVVNNNNINNNNNNSNTNGFSNFSTTTN
GNHDLLSQPALSHNHNQQQHHNLHHLHHQHHYFASNQDPVYVSSPPGINSFTHFSNSPIS
NFNNNSPFFKSNLN*lin**lssgci*nvnnn**liixxxxiiiiimiiynn***qfffv
lfvifypliyfpr
Translated Amino Acid sequence (All Frames) 
Frame A:
nysnnsn*mv*lshqlnrqlksiiqllqmvmefiitl*mvq*iitisnnntntiitiiti
iiiii*lvvvsmvllqptlyyhyhchrlhilyqkv*mvlhqvvltiftinnnisrimvni
lecrtlinqlisifpliipspiyrilifveltsliilihhrivvqlhrvqsqhqv*v*ii
i---

---iistptlriiykmdfsttn*difpnlmllcll*ititltttitiaipmvfrifqqlq
maimiyyrsql*aiitinnnittftifiiniiilqvikiqfmyhhhlvsillhifqilqf
qilitilhfsnqilin*sinnyradvykm*titnn***xxx********fiiinnnnsfl
fcl*ffil*ftfq

Frame B:
itattaiewcnsvtnsian*kv*fncfkw*wsss*lfkwfneslpsatttptpsspssps
****yd***cqwyyfnqpfitttividytffikkfkwyyikwy*rsspstttylelwsif
wnael*sis*fqsfl*syhhqsies*sswn*hl**y*fiie*wfnfiefnhnikfkyk**
---

---*yqhqlyesftkwtfqrrikisfri*cffvcck*q*h*qqq*q*qyqwffeffnnyk
wqs*fiiaasfkp*sqstttsqpspsssstslfck*srsslciittwyqffytffkfsnf
kf**qfsifqiks*linqliiiermyikckq*litnnxxxxnnnnnndnl**liitilfc
fvcdflsfnllsk

Frame C:
LQQQQQLNGVTQSPTQSPIKKYNSIASNGNGVHHNSLNGSMNHYHQQQQHQHHHHHHHHH
NNNNMISSSVNGTTSTNPLLPLPLSSTTHSLSKSLNGTTSSGINDLHHQQQHISNYGQYF
GMPNFNQSVDFNLSFNHTITNLSNLDLRGINISDNINSSSNSGSTSSSSITTSSLSINNN
---

---NINTNFTNHLQNGLFNDELRYLSEFNASLFVVNNNNINNNNNNSNTNGFSNFSTTTN
GNHDLLSQPALSHNHNQQQHHNLHHLHHQHHYFASNQDPVYVSSPPGINSFTHFSNSPIS
NFNNNSPFFKSNLN*lin**lssgci*nvnnn**liixxxxiiiiimiiynn***qfffv
lfvifypliyfpr
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLG867 (SLG867Q) /CSM/SL/SLG8-C/SLG867Q.Seq.d/                       1915   0.0
AFM160 (AFM160Q) /CSM/AF/AFM1-C/AFM160Q.Seq.d/                        900   0.0
AFM461 (AFM461Q) /CSM/AF/AFM4-C/AFM461Q.Seq.d/                        870   0.0
SSE828 (SSE828Q) /CSM/SS/SSE8-B/SSE828Q.Seq.d/                        658   0.0
SSA373 (SSA373Q) /CSM/SS/SSA3-D/SSA373Q.Seq.d/                        486   e-136
SSF435 (SSF435Q) /CSM/SS/SSF4-B/SSF435Q.Seq.d/                        428   e-119
SSK376 (SSK376Q) /CSM/SS/SSK3-D/SSK376Q.Seq.d/                        408   e-113
SSB821 (SSB821Q) /CSM/SS/SSB8-A/SSB821Q.Seq.d/                        404   e-111
SSB540 (SSB540Q) /CSM/SS/SSB5-B/SSB540Q.Seq.d/                         60   8e-08
CHO614 (CHO614Q) /CSM/CH/CHO6-A/CHO614Q.Seq.d/                         58   3e-07
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU061982) Dictyostelium discoideum slug cDNA, clone SLG867.      716   0.0    2
(BJ329586) Dictyostelium discoideum cDNA clone:dda25g15, 5' ...   700   0.0    2
(BJ329602) Dictyostelium discoideum cDNA clone:dda25j16, 5' ...   502   0.0    2
(AU039971) Dictyostelium discoideum slug cDNA, clone SLG867.      422   e-142  3
(BJ346929) Dictyostelium discoideum cDNA clone:dda25g15, 3' ...   422   e-135  2
(BJ346940) Dictyostelium discoideum cDNA clone:dda25j16, 3' ...   422   e-135  2
(AU072543) Dictyostelium discoideum slug cDNA, clone SSE828.      204   5e-48  1
(C89625) Dictyostelium discoideum slug cDNA, clone SSA373.        100   1e-20  2
(AU072603) Dictyostelium discoideum slug cDNA, clone SSA373.      100   7e-19  2
(AU074325) Dictyostelium discoideum slug cDNA, clone SSK376.      100   2e-16  1
dna update 2009. 5.28
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 1,121,116,240
protein update 2009. 6. 4
PSORT 

 psg: 0.74  gvh: 0.26  alm: 0.54  top: 0.53  tms: 0.00  mit: 0.43  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: mitochondrial
	 32.0 %: nuclear
	 16.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall

>> prediction for SLG867 is mit
5' end seq. ID SLG867F
5' end seq. 
>SLG867F.Seq
AATTACAGCAACAACAGCAATTGAATGGTGTAACTCAGTCACCAACTCAATCGCCAATTA
AAAAGTATAATTCAATTGCTTCAAATGGTAATGGAGTTCATCATAACTCTTTAAATGGTT
CAATGAATCATTACCATCAGCAACAACAACACCAACACCATCATCACCATCATCACCATC
ATAATAATAATAATATGATTAGTAGTAGTGTCAATGGTACTACTTCAACCAACCCTTTAT
TACCACTACCATTGTCATCGACTACACATTCTTTATCAAAAAGTTTAAATGGTACTACAT
CAAGTGGTATTAACGATCTTCACCATCAACAACAACATATCTCGAATTATGGTCAATATT
TTGGAATGCCGAACTTTAATCAATCAGTTGATTTCAATCTTTCCTTTAATCATACCATCA
CCAATCTATCGAATCTTGATCTTCGTGGAATTAACATCTCTGATAATATTAATTCATCAT
CGAATAGTGGTTCAACTTCATCGAGTTCAATCACAACATCAAGTTTAAGTATAAATAATA
ATA----------
Length of 5' end seq. 543
3' end seq. ID SLG867Z
3' end seq. 
>SLG867Z.Seq
----------ATAATATCAACACCAACTTTACGAATCATTTACAAAATGGACTTTTCAAC
GACGAATTAAGATATCTTTCCGAATTTAATGCTTCTTTGTTTGTTGTAAATAACAATAAC
ATTAACAACAACAATAACAATAGCAATACCAATGGTTTTTCGAATTTTTCAACAACTACA
AATGGCAATCATGATTTATTATCGCAGCCAGCTTTAAGCCATAATCACAATCAACAACAA
CATCACAACCTTCACCATCTTCATCATCAACATCATTATTTTGCAAGTAATCAAGATCCA
GTTTATGTATCATCACCACCTGGTATCAATTCTTTTACACATTTTTCAAATTCTCCAATT
TCAAATTTTAATAACAATTCTCCATTTTTCAAATCAAATCTTAATTAATTAATCAATTAA
TAATTATCGAGCGGATGTATATAAAATGTAAACAATAACTAATAACTAATAATAANNNNN
NNNNTAATAATAATAATAATAATGATAATTTATAATAATTAATAATAACAATTCTTTTTT
GTTTTGTTTGTGATTTTTTATCCTTTAATTTACTTTCCAAGA
Length of 3' end seq. 572
Connected seq. ID SLG867P
Connected seq. 
>SLG867P.Seq
AATTACAGCAACAACAGCAATTGAATGGTGTAACTCAGTCACCAACTCAATCGCCAATTA
AAAAGTATAATTCAATTGCTTCAAATGGTAATGGAGTTCATCATAACTCTTTAAATGGTT
CAATGAATCATTACCATCAGCAACAACAACACCAACACCATCATCACCATCATCACCATC
ATAATAATAATAATATGATTAGTAGTAGTGTCAATGGTACTACTTCAACCAACCCTTTAT
TACCACTACCATTGTCATCGACTACACATTCTTTATCAAAAAGTTTAAATGGTACTACAT
CAAGTGGTATTAACGATCTTCACCATCAACAACAACATATCTCGAATTATGGTCAATATT
TTGGAATGCCGAACTTTAATCAATCAGTTGATTTCAATCTTTCCTTTAATCATACCATCA
CCAATCTATCGAATCTTGATCTTCGTGGAATTAACATCTCTGATAATATTAATTCATCAT
CGAATAGTGGTTCAACTTCATCGAGTTCAATCACAACATCAAGTTTAAGTATAAATAATA
ATA----------ATAATATCAACACCAACTTTACGAATCATTTACAAAATGGACTTTTC
AACGACGAATTAAGATATCTTTCCGAATTTAATGCTTCTTTGTTTGTTGTAAATAACAAT
AACATTAACAACAACAATAACAATAGCAATACCAATGGTTTTTCGAATTTTTCAACAACT
ACAAATGGCAATCATGATTTATTATCGCAGCCAGCTTTAAGCCATAATCACAATCAACAA
CAACATCACAACCTTCACCATCTTCATCATCAACATCATTATTTTGCAAGTAATCAAGAT
CCAGTTTATGTATCATCACCACCTGGTATCAATTCTTTTACACATTTTTCAAATTCTCCA
ATTTCAAATTTTAATAACAATTCTCCATTTTTCAAATCAAATCTTAATTAATTAATCAAT
TAATAATTATCGAGCGGATGTATATAAAATGTAAACAATAACTAATAACTAATAATAANN
NNNNNNNTAATAATAATAATAATAATGATAATTTATAATAATTAATAATAACAATTCTTT
TTTGTTTTGTTTGTGATTTTTTATCCTTTAATTTACTTTCCAAGA
Length of connected seq. 1115
Full length Seq ID -
Full length Seq. -
Length of full length seq. -