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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLG821
Library SL
(Link to library)
Clone ID SLG821
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15540-1
Original site URL
Representative seq. ID SLG821P
(Link to Original site)
Representative DNA sequence 
>SLG821 (SLG821Q) /CSM/SL/SLG8-A/SLG821Q.Seq.d/
CAACAACAACAACAAACAACAACAACAACAATAGTAATAATAACAACAACAACAGCAACA
ACAACAACGGCAACAATGGTGGTATGTTTAATGGAGGATTTGTTAACAATAACAACCATA
ATAATAATAACAACAACAATAATAACAATGGTAACTTAAACTTCCACAACTTTTTACAAT
TCCAAAACCAACTCCAAAATTCAAATCAACAACAACAACAACAACAACTACAACAACAAC
AACAATTACAACAACACCAACAACAACAACAACAATTACAACAACAACAATTACAACAAC
AATTTAATATTGGCAAACCATGTAACATTAATCAAAAGAAAGGTAGAGGTGCTAATAATA
ATAATAACAACATGCCAATTGGTAATCAAGCAAGTTTAGTTATTAGTCATCCTAGTTTAA
AAATGGAAGGTCATCATCATTTACAACAACAACAACAACAACAACATCATCATCAACATC
AACAACATCAACAAAATGGAAATGGTAATAATACACAAATTGTAATTCAGCATTCTTAGA
TTTATCATCACCAGATTCACATAATCAAATGTCACCATCATCACCAATTTGTTTACCAGA
AAGTCCAATGGGTGCTCAACATTGGGAGAGTGGTTTAGXXXXXXXXXXAAATCGATGATA
AAACCGGTATCTTTGATTCTCAACGTTTCCTCGCATTCAATAATCCACAAGCCATGAGTA
AATATGAATCCTATCGTATCTACATTCATCCTTCACTCGGTTACAGTGGTAATGCAAAGA
GATTCAAACAACAACCAGATGTCAATGAGAAAGCTTTGATTTTGGATGGCAATGTCTACG
ATGGACATTTAAATCCAATTTACAACTGTAAAATCTGTACCGAATATTATCAAACCAAAT
CTTACTTTTCCGCTAATCCACATGCAAAAGGTAAAGTTCTTTTGGTCAAAAATAACATAT
TAACTCGTGTCAAAGATGGTGGTTTCACTCTCTCCTTAAAGCCAATGTGTTGCAGTGGTC
ATAACTCTCATATCCCACTCTACTTTCACTTTACCCTTACAAATCCACTCACAAATGAAG
TTGTACTCCAATCACTCATTAATGTTAATGTTAAGCAATGGAAAAAATCAGTTCCAAATA
AATCGAAAAAACAAAGATTTGAATAAATAATTAATAATAATAATAATATTCCTTTTGCTT
AA
sequence update 1999. 2. 9
Translated Amino Acid sequence 
nnnnkqqqqq****qqqqqqqqrqqwwyv*wric*q*qp****qqq**qw*lklpqlfti
pkptpkfksttttttttttttitttptttttittttittti*ywqtm*h*sker*rc***
**qhanw*sskfsy*ss*fkngrsssfttttttttssststtstkwkw**YTNCNSAFLD
LSSPDSHNQMSPSSPICLPESPMGAQHWESGL---

---IDDKTGIFDSQRFLAFNNPQAMSKYESYRIYIHPSLGYSGNAKRFKQQPDVNEKALI
LDGNVYDGHLNPIYNCKICTEYYQTKSYFSANPHAKGKVLLVKNNILTRVKDGGFTLSLK
PMCCSGHNSHIPLYFHFTLTNPLTNEVVLQSLINVNVKQWKKSVPNKSKKQRFE*iinnn
nnipfa*
Translated Amino Acid sequence (All Frames) 
Frame A:
qqqqqtttttiviittttattttatmvvclmedlltittiiiitttiitmvt*tsttfyn
sktnskiqinnnnnnnynnnnnynntnnnnnnynnnnynnnlilanhvtlikrkvevlii
iittcqlvikqv*llvilv*kwkviiiynnnnnnniiininninkmemviihkl*fsilr
fiitrft*snvtiitnlftrksngcstlgewf---

---ksmikpvslilnvsshsiihkp*vnmnpivstfilhsvtvvmqrdsnnnqmsmrkl*
fwmamstmdi*iqfttvksvpniikpnltfplihmqkvkffwskity*lvskmvvslsp*
sqcvavvitlishstftlplqihsqmklysnhslmlmlsngknqfqinrknkdlnk*lii
iiiflll

Frame B:
nnnnkqqqqq****qqqqqqqqrqqwwyv*wric*q*qp****qqq**qw*lklpqlfti
pkptpkfksttttttttttttitttptttttittttittti*ywqtm*h*sker*rc***
**qhanw*sskfsy*ss*fkngrsssfttttttttssststtstkwkw**YTNCNSAFLD
LSSPDSHNQMSPSSPICLPESPMGAQHWESGL---

---nr**nryl*fstfpriq*stshe*i*ilsylhssftrlqw*ckeiqtttrcq*esfd
fgwqclrwtfksnlql*nlyrilsnqillfr*stckr*ssfgqk*hinscqrwwfhsllk
anvlqws*lsyptllslypyksthk*sctpith*c*c*amekissk*iektki*inn***
**ysfcl

Frame C:
ttttnnnnnnsnnnnnnsnnnngnnggmfnggfvnnnnhnnnnnnnnnngnlnfhnflqf
qnqlqnsnqqqqqqqlqqqqqlqqhqqqqqqlqqqqlqqqfnigkpcninqkkgrgannn
nnnmpignqaslvishpslkmeghhhlqqqqqqqhhhqhqqhqqngngnntqiviqhs*i
yhhqihiikchhhhqfvyqkvqwvlnigrvv*---

---IDDKTGIFDSQRFLAFNNPQAMSKYESYRIYIHPSLGYSGNAKRFKQQPDVNEKALI
LDGNVYDGHLNPIYNCKICTEYYQTKSYFSANPHAKGKVLLVKNNILTRVKDGGFTLSLK
PMCCSGHNSHIPLYFHFTLTNPLTNEVVLQSLINVNVKQWKKSVPNKSKKQRFE*iinnn
nnipfa*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLG821 (SLG821Q) /CSM/SL/SLG8-A/SLG821Q.Seq.d/                       1181   0.0
SLI323 (SLI323Q) /CSM/SL/SLI3-A/SLI323Q.Seq.d/                        936   0.0
SLA117 (SLA117Q) /CSM/SL/SLA1-A/SLA117Q.Seq.d/                        936   0.0
SHA777 (SHA777Q) /CSM/SH/SHA7-D/SHA777Q.Seq.d/                        936   0.0
CHC177 (CHC177Q) /CSM/CH/CHC1-D/CHC177Q.Seq.d/                        936   0.0
CFE726 (CFE726Q) /CSM/CF/CFE7-B/CFE726Q.Seq.d/                        936   0.0
AFO507 (AFO507Q) /CSM/AF/AFO5-A/AFO507Q.Seq.d/                        936   0.0
VHJ792 (VHJ792Q) /CSM/VH/VHJ7-D/VHJ792Q.Seq.d/                        932   0.0
VFA838 (VFA838Q) /CSM/VF/VFA8-B/VFA838Q.Seq.d/                        932   0.0
CHR159 (CHR159Q) /CSM/CH/CHR1-C/CHR159Q.Seq.d/                        932   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ442744) Dictyostelium discoideum cDNA clone:ddv50h23, 3' ...   932   0.0    2
(AU053290) Dictyostelium discoideum slug cDNA, clone SLI323.      938   0.0    1
(AU039953) Dictyostelium discoideum slug cDNA, clone SLG821.      938   0.0    1
(C25517) Dictyostelium discoideum slug cDNA, clone SLA117.        938   0.0    1
(BJ403664) Dictyostelium discoideum cDNA clone:dds25j19, 3' ...   938   0.0    1
(BJ378034) Dictyostelium discoideum cDNA clone:ddc26i19, 3' ...   938   0.0    1
(BJ346195) Dictyostelium discoideum cDNA clone:dda30m01, 3' ...   938   0.0    1
(BJ371910) Dictyostelium discoideum cDNA clone:ddc10d07, 3' ...   936   0.0    1
(BJ429113) Dictyostelium discoideum cDNA clone:ddv2l10, 3' e...   932   0.0    1
(BJ385909) Dictyostelium discoideum cDNA clone:ddc56e15, 3' ...   932   0.0    1
dna update 2009. 5.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM269894_32(AM269894|pid:none) Eimeria tenella chromosome 1, ord...    29   4.7
BA000040_1129(BA000040|pid:none) Bradyrhizobium japonicum USDA 1...    35   6.8
BT073025_1(BT073025|pid:none) Oncorhynchus mykiss clone omyk-evn...    34   8.8
BT047510_1(BT047510|pid:none) Salmo salar clone ssal-evd-578-123...    34   8.8
BT073577_1(BT073577|pid:none) Oncorhynchus mykiss clone omyk-evn...    34   8.8
BT074070_1(BT074070|pid:none) Oncorhynchus mykiss clone omyk-evo...    34   8.8
BT056394_1(BT056394|pid:none) Salmo salar clone ssal-evd-520-220...    34   8.8
protein update 2009. 6. 4
PSORT 

 psg: 0.75  gvh: 0.40  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 36.0 %: nuclear
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial

>> prediction for SLG821 is cyt
5' end seq. ID SLG821F
5' end seq. 
>SLG821F.Seq
CAACAACAACAACAAACAACAACAACAACAATAGTAATAATAACAACAACAACAGCAACA
ACAACAACGGCAACAATGGTGGTATGTTTAATGGAGGATTTGTTAACAATAACAACCATA
ATAATAATAACAACAACAATAATAACAATGGTAACTTAAACTTCCACAACTTTTTACAAT
TCCAAAACCAACTCCAAAATTCAAATCAACAACAACAACAACAACAACTACAACAACAAC
AACAATTACAACAACACCAACAACAACAACAACAATTACAACAACAACAATTACAACAAC
AATTTAATATTGGCAAACCATGTAACATTAATCAAAAGAAAGGTAGAGGTGCTAATAATA
ATAATAACAACATGCCAATTGGTAATCAAGCAAGTTTAGTTATTAGTCATCCTAGTTTAA
AAATGGAAGGTCATCATCATTTACAACAACAACAACAACAACAACATCATCATCAACATC
AACAACATCAACAAAATGGAAATGGTAATAATACACAAATTGTAATTCAGCATTCTTAGA
TTTATCATCACCAGATTCACATAATCAAATGTCACCATCATCACCAATTTGTTTACCAGA
AAGTCCAATGGGTGCTCAACATTGGGAGAGTGGTTTAG----------
Length of 5' end seq. 638
3' end seq. ID SLG821Z
3' end seq. 
>SLG821Z.Seq
----------AAATCGATGATAAAACCGGTATCTTTGATTCTCAACGTTTCCTCGCATTC
AATAATCCACAAGCCATGAGTAAATATGAATCCTATCGTATCTACATTCATCCTTCACTC
GGTTACAGTGGTAATGCAAAGAGATTCAAACAACAACCAGATGTCAATGAGAAAGCTTTG
ATTTTGGATGGCAATGTCTACGATGGACATTTAAATCCAATTTACAACTGTAAAATCTGT
ACCGAATATTATCAAACCAAATCTTACTTTTCCGCTAATCCACATGCAAAAGGTAAAGTT
CTTTTGGTCAAAAATAACATATTAACTCGTGTCAAAGATGGTGGTTTCACTCTCTCCTTA
AAGCCAATGTGTTGCAGTGGTCATAACTCTCATATCCCACTCTACTTTCACTTTACCCTT
ACAAATCCACTCACAAATGAAGTTGTACTCCAATCACTCATTAATGTTAATGTTAAGCAA
TGGAAAAAATCAGTTCCAAATAAATCGAAAAAACAAAGATTTGAATAAATAATTAATAAT
AATAATAATATTCCTTTTGCTTAA
Length of 3' end seq. 554
Connected seq. ID SLG821P
Connected seq. 
>SLG821P.Seq
CAACAACAACAACAAACAACAACAACAACAATAGTAATAATAACAACAACAACAGCAACA
ACAACAACGGCAACAATGGTGGTATGTTTAATGGAGGATTTGTTAACAATAACAACCATA
ATAATAATAACAACAACAATAATAACAATGGTAACTTAAACTTCCACAACTTTTTACAAT
TCCAAAACCAACTCCAAAATTCAAATCAACAACAACAACAACAACAACTACAACAACAAC
AACAATTACAACAACACCAACAACAACAACAACAATTACAACAACAACAATTACAACAAC
AATTTAATATTGGCAAACCATGTAACATTAATCAAAAGAAAGGTAGAGGTGCTAATAATA
ATAATAACAACATGCCAATTGGTAATCAAGCAAGTTTAGTTATTAGTCATCCTAGTTTAA
AAATGGAAGGTCATCATCATTTACAACAACAACAACAACAACAACATCATCATCAACATC
AACAACATCAACAAAATGGAAATGGTAATAATACACAAATTGTAATTCAGCATTCTTAGA
TTTATCATCACCAGATTCACATAATCAAATGTCACCATCATCACCAATTTGTTTACCAGA
AAGTCCAATGGGTGCTCAACATTGGGAGAGTGGTTTAG----------AAATCGATGATA
AAACCGGTATCTTTGATTCTCAACGTTTCCTCGCATTCAATAATCCACAAGCCATGAGTA
AATATGAATCCTATCGTATCTACATTCATCCTTCACTCGGTTACAGTGGTAATGCAAAGA
GATTCAAACAACAACCAGATGTCAATGAGAAAGCTTTGATTTTGGATGGCAATGTCTACG
ATGGACATTTAAATCCAATTTACAACTGTAAAATCTGTACCGAATATTATCAAACCAAAT
CTTACTTTTCCGCTAATCCACATGCAAAAGGTAAAGTTCTTTTGGTCAAAAATAACATAT
TAACTCGTGTCAAAGATGGTGGTTTCACTCTCTCCTTAAAGCCAATGTGTTGCAGTGGTC
ATAACTCTCATATCCCACTCTACTTTCACTTTACCCTTACAAATCCACTCACAAATGAAG
TTGTACTCCAATCACTCATTAATGTTAATGTTAAGCAATGGAAAAAATCAGTTCCAAATA
AATCGAAAAAACAAAGATTTGAATAAATAATTAATAATAATAATAATATTCCTTTTGCTT
AA
Length of connected seq. 1192
Full length Seq ID -
Full length Seq. -
Length of full length seq. -