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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLG608
Library SL
(Link to library)
Clone ID SLG608
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U12170-1
Original site URL
Representative seq. ID SLG608P
(Link to Original site)
Representative DNA sequence 
>SLG608 (SLG608Q) /CSM/SL/SLG6-A/SLG608Q.Seq.d/
CAATACCACAATATCCTTCACTTAATGATAGTAGTAGTAATGGAAATGGGACACCTGCNT
TATCATCACCCTCTTCAACTACTCCACATCCAACTACTCCACATCCAACCACTCCAACCT
CAACTCCAAATCAAAGATTCCAAAGTAATGGTTCAAGTTCATTTCAAAATCAACTTCAAA
ATCATTTAGAAAATAAACTTTCAAGTTTTTGGTCTTCTCAACTAAGAGATATTCATAAAA
CTGAAGATTTTAAAACTCATGAATTACCATTAGCAAGAATTAAAAAAATTATGAAATCCG
ATAAAGATGTTAATAAAATTTCATCTGAAGCACCGATTTTATTTGCAAAAGCATGTGAAA
TTTTAATATTAGAAATGACCCATAGATCATGGGTACACACTGAAATGAATAAAAGAAGAA
CTCTTCAAAGAACCGATATAATAAACTCATTATCAAGATGTGAAACCTTTGATTTTCTTA
TCGATATGTTACCTCGTGATGAAATAAAACCATCAAGAAAATATCTTGATGAGTTATCGA
AAGCTCAAGTAATTACTCCTGAATATCTTCAATATTTACAATTACAACAAATGGCTACTG
AAAATCAACAAAAAAATAATCAAAATAATCAAGATAATCAXXXXXXXXXXATAATAATAA
TAATAATAATAATAATAATACTTTTGATTATTCTTTTAATGACTCAAAAAATGATGAACA
CAAAGTTTCATTGAATGAATCAAATTTTATATCAACGCCAACAAATGATAATATAATATC
TTCTTCTCCATCGAGTCAAGTTTACTATTATTCTGATAATTGAAAAATAATTAATTAAAT
AACCTTACATTATATTGATATTTGGGAAAA
sequence update 1999. 2. 9
Translated Amino Acid sequence 
IPQYPSLNDSSSNGNGTPALSSPSSTTPHPTTPHPTTPTSTPNQRFQSNGSSSFQNQLQN
HLENKLSSFWSSQLRDIHKTEDFKTHELPLARIKKIMKSDKDVNKISSEAPILFAKACEI
LILEMTHRSWVHTEMNKRRTLQRTDIINSLSRCETFDFLIDMLPRDEIKPSRKYLDELSK
AQVITPEYLQYLQLQQMATENQQKNNQNNQDN---

---NNNNNNNNNTFDYSFNDSKNDEHKVSLNESNFISTPTNDNIISSSPSSQVYYYSDN*
kiin*itlhyidiwe
Translated Amino Acid sequence (All Frames) 
Frame A:
qyhnilhlmivvvmemghlxyhhplqllhiqllhiqplqpqlqikdskvmvqvhfkinfk
ii*kinfqvfglln*eifiklkilklmnyh*qelkkl*npikmlikfhlkhrfylqkhvk
f*y*k*pidhgytlk*ikeelfkepi**thyqdvkpliflsicylvmk*nhqenilmsyr
klk*lllnifniynynkwllkinkkiikiikii---

---iiiiiiiiiilliillmtqkmmntkfh*mnqilyqrqqmii*ylllhrvkftiilii
ek*lik*pyiilifgk

Frame B:
nttisft******wkwdtcxiitlfnystsnystsnhsnlnskskipk*wfkfiskstsk
sfrk*tfkflvfstkrys*n*rf*ns*itiskn*knyeir*rc**nfi*stdficksm*n
fnirndp*imgth*ne*kknssknrynkliikm*nl*fsyryvts**nktikkis**vie
sssnys*issiftittngy*kstkk*sk*sr*s---

---*********yf*lff**lkk**tqsfie*ikfyinank**yniffsiesslllf**l
knn*lnnltly*ylgk

Frame C:
IPQYPSLNDSSSNGNGTPALSSPSSTTPHPTTPHPTTPTSTPNQRFQSNGSSSFQNQLQN
HLENKLSSFWSSQLRDIHKTEDFKTHELPLARIKKIMKSDKDVNKISSEAPILFAKACEI
LILEMTHRSWVHTEMNKRRTLQRTDIINSLSRCETFDFLIDMLPRDEIKPSRKYLDELSK
AQVITPEYLQYLQLQQMATENQQKNNQNNQDN---

---NNNNNNNNNTFDYSFNDSKNDEHKVSLNESNFISTPTNDNIISSSPSSQVYYYSDN*
kiin*itlhyidiwe
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLG608 (SLG608Q) /CSM/SL/SLG6-A/SLG608Q.Seq.d/                       1158   0.0
AHA747 (AHA747Q) /CSM/AH/AHA7-B/AHA747Q.Seq.d/                        767   0.0
VHE887 (VHE887Q) /CSM/VH/VHE8-D/VHE887Q.Seq.d/                         40   0.055
SLK491 (SLK491Q) /CSM/SL/SLK4-D/SLK491Q.Seq.d/                         40   0.055
SLF402 (SLF402Q) /CSM/SL/SLF4-A/SLF402Q.Seq.d/                         40   0.055
SHE755 (SHE755Q) /CSM/SH/SHE7-C/SHE755Q.Seq.d/                         40   0.055
SFC352 (SFC352Q) /CSM/SF/SFC3-C/SFC352Q.Seq.d/                         40   0.055
CHG656 (CHG656Q) /CSM/CH/CHG6-C/CHG656Q.Seq.d/                         40   0.055
CHE790 (CHE790Q) /CSM/CH/CHE7-D/CHE790Q.Seq.d/                         40   0.055
CFF854 (CFF854Q) /CSM/CF/CFF8-C/CFF854Q.Seq.d/                         40   0.055
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU061919) Dictyostelium discoideum slug cDNA, clone SLG608.      636   0.0    2
(AC116330) Dictyostelium discoideum chromosome 2 map 3191214...   585   0.0    4
(BJ348184) Dictyostelium discoideum cDNA clone:dda32n11, 3' ...   551   0.0    2
(AU039860) Dictyostelium discoideum slug cDNA, clone SLG608.      377   e-100  1
(AM738093) Cucumis melo subsp. melo EST, clone 15d_01-B09-M13R.    58   6e-04  1
(EA693108) Sequence 71987 from patent US 7365185.                  50   0.018  4
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    34   0.022  18
(AC153821) Mus musculus 10 BAC RP23-193A14 (Roswell Park Can...    52   0.036  1
(AP008218) Oryza sativa (japonica cultivar-group) genomic DN...    52   0.036  1
(AL713908) Oryza sativa chromosome 12, . BAC OSJNBa0011B18 o...    52   0.036  1
dna update 2009. 5.26
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116330_17(AC116330|pid:none) Dictyostelium discoideum chromoso...   306   4e-82
AM441941_3(AM441941|pid:none) Vitis vinifera contig VV78X036116....   151   3e-35
(Q8LCG7) RecName: Full=Nuclear transcription factor Y subunit C-...   150   5e-35
EF081848_1(EF081848|pid:none) Picea sitchensis clone WS02715_K12...   149   2e-34
AB104613_1(AB104613|pid:none) Daucus carota C-HAP5B mRNA for CCA...   147   4e-34
CP001577_473(CP001577|pid:none) Micromonas sp. RCC299 chromosome...   147   6e-34
AB104612_1(AB104612|pid:none) Daucus carota C-HAP5A mRNA for CCA...   147   6e-34
EF147023_1(EF147023|pid:none) Populus trichocarpa clone WS01226_...   145   1e-33
AM425377_1(AM425377|pid:none) Vitis vinifera contig VV78X032994....   145   1e-33
AB288042_1(AB288042|pid:none) Oryza sativa Japonica Group OsHAP5...   145   1e-33
protein update 2009. 6. 4
PSORT 

 psg: 0.75  gvh: 0.49  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.44  mip: 0.08
 nuc: 0.03  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: mitochondrial
	 32.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: cytoplasmic

>> prediction for SLG608 is mit
5' end seq. ID SLG608F
5' end seq. 
>SLG608F.Seq
CAATACCACAATATCCTTCACTTAATGATAGTAGTAGTAATGGAAATGGGACACCTGCNT
TATCATCACCCTCTTCAACTACTCCACATCCAACTACTCCACATCCAACCACTCCAACCT
CAACTCCAAATCAAAGATTCCAAAGTAATGGTTCAAGTTCATTTCAAAATCAACTTCAAA
ATCATTTAGAAAATAAACTTTCAAGTTTTTGGTCTTCTCAACTAAGAGATATTCATAAAA
CTGAAGATTTTAAAACTCATGAATTACCATTAGCAAGAATTAAAAAAATTATGAAATCCG
ATAAAGATGTTAATAAAATTTCATCTGAAGCACCGATTTTATTTGCAAAAGCATGTGAAA
TTTTAATATTAGAAATGACCCATAGATCATGGGTACACACTGAAATGAATAAAAGAAGAA
CTCTTCAAAGAACCGATATAATAAACTCATTATCAAGATGTGAAACCTTTGATTTTCTTA
TCGATATGTTACCTCGTGATGAAATAAAACCATCAAGAAAATATCTTGATGAGTTATCGA
AAGCTCAAGTAATTACTCCTGAATATCTTCAATATTTACAATTACAACAAATGGCTACTG
AAAATCAACAAAAAAATAATCAAAATAATCAAGATAATCA----------
Length of 5' end seq. 640
3' end seq. ID SLG608Z
3' end seq. 
>SLG608Z.Seq
----------ATAATAATAATAATAATAATAATAATAATACTTTTGATTATTCTTTTAAT
GACTCAAAAAATGATGAACACAAAGTTTCATTGAATGAATCAAATTTTATATCAACGCCA
ACAAATGATAATATAATATCTTCTTCTCCATCGAGTCAAGTTTACTATTATTCTGATAAT
TGAAAAATAATTAATTAAATAACCTTACATTATATTGATATTTGGGAAAA
Length of 3' end seq. 220
Connected seq. ID SLG608P
Connected seq. 
>SLG608P.Seq
CAATACCACAATATCCTTCACTTAATGATAGTAGTAGTAATGGAAATGGGACACCTGCNT
TATCATCACCCTCTTCAACTACTCCACATCCAACTACTCCACATCCAACCACTCCAACCT
CAACTCCAAATCAAAGATTCCAAAGTAATGGTTCAAGTTCATTTCAAAATCAACTTCAAA
ATCATTTAGAAAATAAACTTTCAAGTTTTTGGTCTTCTCAACTAAGAGATATTCATAAAA
CTGAAGATTTTAAAACTCATGAATTACCATTAGCAAGAATTAAAAAAATTATGAAATCCG
ATAAAGATGTTAATAAAATTTCATCTGAAGCACCGATTTTATTTGCAAAAGCATGTGAAA
TTTTAATATTAGAAATGACCCATAGATCATGGGTACACACTGAAATGAATAAAAGAAGAA
CTCTTCAAAGAACCGATATAATAAACTCATTATCAAGATGTGAAACCTTTGATTTTCTTA
TCGATATGTTACCTCGTGATGAAATAAAACCATCAAGAAAATATCTTGATGAGTTATCGA
AAGCTCAAGTAATTACTCCTGAATATCTTCAATATTTACAATTACAACAAATGGCTACTG
AAAATCAACAAAAAAATAATCAAAATAATCAAGATAATCA----------ATAATAATAA
TAATAATAATAATAATAATACTTTTGATTATTCTTTTAATGACTCAAAAAATGATGAACA
CAAAGTTTCATTGAATGAATCAAATTTTATATCAACGCCAACAAATGATAATATAATATC
TTCTTCTCCATCGAGTCAAGTTTACTATTATTCTGATAATTGAAAAATAATTAATTAAAT
AACCTTACATTATATTGATATTTGGGAAAA
Length of connected seq. 860
Full length Seq ID -
Full length Seq. -
Length of full length seq. -