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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLG494
Library SL
(Link to library)
Clone ID SLG494
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15444-1
Original site URL
Representative seq. ID SLG494F
(Link to Original site)
Representative DNA sequence 
>SLG494 (SLG494Q) /CSM/SL/SLG4-D/SLG494Q.Seq.d/
CCCACGCGTCCGAATCGAAAAGAAGAAAGCTAAATTAGTCGTCATTGCCCACGATGTTGA
CCCAGTTGAACTCGTCTTATACTTACCAACCCTCTGCAGACGTATGGATGTCCCATACTG
TATCGTCAAATCTAAATCCAGATTAGGTGAATTAGTTCACATGAGAAACGCTTCATGTGT
TGCCCTCACTGGTGTCAACTCTGCTGACTCAAACGAACTCGCTTTATTAGTTGAATCCGC
CAAACAAATGTTCAACAATAACAGTGAACACAGAAAGACCTGGGGTGGTAACACTTTATC
TGGTCCAGCTCGTGCTATCTTAGCCAAACGTCAAAAAGCTGAAGCCAAAGAAAGTTTAGC
CAAATCAAAGATCTAAGCTCTTTAATAGTTTAGCGAGACTCTCACTCTTTTTTTAAATAA
TCAAATAAAATAAAGGTTCTTTAAAAAAXXXXXXXXXX
sequence update 1999. 1.28
Translated Amino Acid sequence 
PRVRIEKKKAKLVVIAHDVDPVELVLYLPTLCRRMDVPYCIVKSKSRLGELVHMRNASCV
ALTGVNSADSNELALLVESAKQMFNNNSEHRKTWGGNTLSGPARAILAKRQKAEAKESLA
KSKI*al**fsetltlflnnqik*rffk---
Translated Amino Acid sequence (All Frames) 
Frame A:
ptrpnrkees*isrhcprc*ps*trliltnplqtygcpilyrqi*iqir*isshekrfmc
cphwcqlc*lkrtrfis*irqtnvqq*q*tqkdlgw*hfiwssscylsqtsks*sqrkfs
qikdlssliv*rdshsffk*snkikvl*k---


Frame B:
PRVRIEKKKAKLVVIAHDVDPVELVLYLPTLCRRMDVPYCIVKSKSRLGELVHMRNASCV
ALTGVNSADSNELALLVESAKQMFNNNSEHRKTWGGNTLSGPARAILAKRQKAEAKESLA
KSKI*al**fsetltlflnnqik*rffk---


Frame C:
haseskrrkln*sslptmltqlnssytyqpsadvwmshtvssnlnpd*vn*ft*etlhvl
pslvstlltqtnsly*lnppnkcstitvnterpgvvtlylvqlvls*pnvkklkpkkv*p
nqrsklfnslarlslff*iik*nkgslk---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLG494 (SLG494Q) /CSM/SL/SLG4-D/SLG494Q.Seq.d/                        846   0.0
SSI357 (SSI357Q) /CSM/SS/SSI3-C/SSI357Q.Seq.d/                        823   0.0
SLB788 (SLB788Q) /CSM/SL/SLB7-D/SLB788Q.Seq.d/                        823   0.0
FC-BF14 (FC-BF14Q) /CSM/FC/FC-BF/FC-BF14Q.Seq.d/                      823   0.0
FC-AP15 (FC-AP15Q) /CSM/FC/FC-AP/FC-AP15Q.Seq.d/                      823   0.0
FC-AK02 (FC-AK02Q) /CSM/FC/FC-AK/FC-AK02Q.Seq.d/                      823   0.0
FC-187 (FC-187Q) /CSM/CG/CG-FC/FC-187Q.Seq.d/                         823   0.0
FC-BB05 (FC-BB05Q) /CSM/FC/FC-BB/FC-BB05Q.Seq.d/                      819   0.0
FC-BB03 (FC-BB03Q) /CSM/FC/FC-BB/FC-BB03Q.Seq.d/                      819   0.0
FC-AW08 (FC-AW08Q) /CSM/FC/FC-AW/FC-AW08Q.Seq.d/                      819   0.0
own update 2004. 8.26
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU061892) Dictyostelium discoideum slug cDNA, clone SLG494.      807   0.0    2
(C23695) Dictyostelium discoideum gamete cDNA, clone FC-AK02.     783   0.0    2
(AU284631) Dictyostelium discoideum gamete cDNA clone:FC-BF1...   783   0.0    2
(AU284368) Dictyostelium discoideum gamete cDNA clone:FC-AP1...   783   0.0    2
(AU034139) Dictyostelium discoideum slug cDNA, clone SLB788.      783   0.0    2
(C90399) Dictyostelium discoideum slug cDNA, clone SSI357.        783   0.0    2
(AU284449) Dictyostelium discoideum gamete cDNA clone:FC-AW0...   783   0.0    2
(AU284518) Dictyostelium discoideum gamete cDNA clone:FC-BB0...   783   0.0    2
(AU284520) Dictyostelium discoideum gamete cDNA clone:FC-BB0...   783   0.0    2
(AU284378) Dictyostelium discoideum gamete cDNA clone:FC-AQ1...   783   0.0    2
dna update 2009. 5.25
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54ZD1) RecName: Full=60S ribosomal protein L7a;                     214   7e-55
CR940348_866(CR940348|pid:none) Theileria annulata strain Ankara...   127   1e-28
AY769275_1(AY769275|pid:none) Bombyx mori ribosomal protein L7A ...   125   6e-28
DQ440224_1(DQ440224|pid:none) Aedes aegypti clone AET-254 riboso...   122   3e-27
BC122243_1(BC122243|pid:none) Danio rerio zgc:153325, mRNA (cDNA...   122   4e-27
(O76732) RecName: Full=60S ribosomal protein L7a;                     121   6e-27
AF079312_1(AF079312|pid:none) Anopheles gambiae 60S ribosomal pr...   119   2e-26
(Q2TBQ5) RecName: Full=60S ribosomal protein L7a;  &BC109810_1(B...   119   2e-26
AB056665_1(AB056665|pid:none) Homo sapiens RP-L7a mRNA for ribos...   119   3e-26
EU934303_1(EU934303|pid:none) TSA: Anopheles darlingi AD-165 60S...   119   3e-26
protein update 2009. 6. 4
PSORT 

 psg: 0.79  gvh: 0.43  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.80  pox: 0.30  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.50  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 32.0 %: nuclear
	 24.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SLG494 is cyt
5' end seq. ID SLG494F
5' end seq. 
>SLG494F.Seq
CCCACGCGTCCGAATCGAAAAGAAGAAAGCTAAATTAGTCGTCATTGCCCACGATGTTGA
CCCAGTTGAACTCGTCTTATACTTACCAACCCTCTGCAGACGTATGGATGTCCCATACTG
TATCGTCAAATCTAAATCCAGATTAGGTGAATTAGTTCACATGAGAAACGCTTCATGTGT
TGCCCTCACTGGTGTCAACTCTGCTGACTCAAACGAACTCGCTTTATTAGTTGAATCCGC
CAAACAAATGTTCAACAATAACAGTGAACACAGAAAGACCTGGGGTGGTAACACTTTATC
TGGTCCAGCTCGTGCTATCTTAGCCAAACGTCAAAAAGCTGAAGCCAAAGAAAGTTTAGC
CAAATCAAAGATCTAAGCTCTTTAATAGTTTAGCGAGACTCTCACTCTTTTTTTAAATAA
TCAAATAAAATAAAGGTTCTTTAAAAAA----------
Length of 5' end seq. 448
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -