>SLG476 (SLG476Q) /CSM/SL/SLG4-D/SLG476Q.Seq.d/
TTAGTAATTACAGTAGCTCCCCAAAACGACATTTGGCCTCAAGGAAGTACATAGCCTAAA
AAAGCAGTTCCCATAGTCAAAAAAAATAGAATAACCCCAATATTTCAGGTCTCCTGATAG
AGATAAGAACCGTAATAGACCCCTCGACCAATATGAAAATACAAGCAAATAAAAAAGAAA
GATGCTCCGTTAGCGTGGGTAGCTCGTAAGAGCCACCCGTAATTAACATCCCGAGAAATA
TGGACAACAGATCTAAATGCTAAATTAACATCTGCAGTATAATGTATGGACAGAAATAGT
CCTGTAACAATTTGGATAACGAGACACAACCCCAACAATGACCCAAAATTCCACCAAATA
GATAGATTTACCGGCGCGGGAAGATCAATCAAGGCACCATTAATTACCTTTAATACCGGA
TGTACTTTTCGCATAGGTTTCCGCATTTTATCCTTAAGCATCCTCTTTAAAAGGACGAAG
CGACGCATGCTCGAAGAAGCAGATCTTGACAACTACAACTAAAGTTAGCAAAAGAATAAT
TCCTAGGCCAATAATTACGGAAATCAACTCGGGAGAAACCAAACCCCCCCCATAAAAXXX
XXXXXXX

lvitvapqndiwpqgst*pkkavpivkknritpifqvs**r*ep**tprpi*kykqikkk
daplawvarkshp*ltsreiwttdlnakltsav*CMDRNSPVTIWITRHNPNNDPKFHQI
DRFTGAGRSIKAPLITFNTGCTFRIGFRILSLSILFKRTKRRMLEEADLDNYN*s*qknn
s*annygnqlgrnqtppi---

Frame A:
lvitvapqndiwpqgst*pkkavpivkknritpifqvs**r*ep**tprpi*kykqikkk
daplawvarkshp*ltsreiwttdlnakltsav*CMDRNSPVTIWITRHNPNNDPKFHQI
DRFTGAGRSIKAPLITFNTGCTFRIGFRILSLSILFKRTKRRMLEEADLDNYN*s*qknn
s*annygnqlgrnqtppi---


Frame B:
**lq*lpkttfglkevhslkkqfp*skkie*pqyfrspdrdknrnrpldqyentsk*krk
mlr*rg*lvratrn*hpekygqqi*mln*hlqynvwteivl*qfg*rdttptmtqnstk*
idlparedqsrhh*lplipdvlfa*vsafyp*asslkgrsdacskkqilttttkvskrii
prpiiteinsgetkppp*---


Frame C:
snyssspkrhlasrkyia*kssshsqkk*nnpnisgllieirtvidpstnmkiqankker
csvsvgss*eppviniprnmdnrskc*inicsimygqk*scnnldnetqpqq*pkippnr
*iyrrgkinqgtinyl*yrmyfshrfphfilkhpl*kdeatharrsrs*qlqlklake*f
lgq*lrkstrekpnpphk---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLG476 (SLG476Q) /CSM/SL/SLG4-D/SLG476Q.Seq.d/                       1108   0.0
VSG760 (VSG760Q) /CSM/VS/VSG7-C/VSG760Q.Seq.d/                         36   0.60
VSA490 (VSA490Q) /CSM/VS/VSA4-D/VSA490Q.Seq.d/                         36   0.60
VFO496 (VFO496Q) /CSM/VF/VFO4-D/VFO496Q.Seq.d/                         36   0.60
VFE595 (VFE595Q) /CSM/VF/VFE5-D/VFE595Q.Seq.d/                         36   0.60
SHH441 (SHH441Q) /CSM/SH/SHH4-B/SHH441Q.Seq.d/                         36   0.60
SFF662 (SFF662Q) /CSM/SF/SFF6-C/SFF662Q.Seq.d/                         36   0.60
MIT-GENOME (MIT-GENOMEQ) /CSM/OTHERS/MIT-GENOMEQ.Seq.d/                36   0.60
FC-IC0155 (FC-IC0155Q) /CSM/FC-IC/FC-IC0155Q.Seq.d/                    36   0.60
VFE682 (VFE682Q) /CSM/VF/VFE6-D/VFE682Q.Seq.d/                         34   2.4

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU061884) Dictyostelium discoideum slug cDNA, clone SLG476.      985   0.0    2
(FJ010865) Hypomesus japonicus isolate HjO-05 cytochrome b (...    72   6e-26  3
(EU494101) Drosophila hypocausta voucher 103972 cytochrome b...    70   2e-25  3
(FJ429092) Architeuthis dux isolate 5-32 mitochondrion, comp...    84   8e-24  3
(AY588938) Haliotis rubra mitochondrion, complete genome.          66   9e-24  4
(FJ010864) Hypomesus japonicus isolate HjO-04 cytochrome b (...    64   1e-23  3
(FJ010863) Hypomesus japonicus isolate HjO-01 cytochrome b (...    64   1e-23  3
(EU494109) Drosophila rubida voucher 109400 cytochrome b (cy...    62   3e-23  3
(EU494133) Drosophila tripunctata voucher 107541 cytochrome ...    78   4e-23  3
(EU180925) Leptobrachium montanum voucher FMNH236700 cytochr...    68   5e-23  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ996217_2(DQ996217|pid:none) Littorina keenae haplotype H172 NA...   249   4e-65
DQ996096_2(DQ996096|pid:none) Littorina keenae haplotype H51 NAD...   248   7e-65
DQ996194_2(DQ996194|pid:none) Littorina keenae haplotype H149 NA...   248   7e-65
DQ159954_10(DQ159954|pid:none) Thais clavigera mitochondrion, co...   248   9e-65
DQ996156_2(DQ996156|pid:none) Littorina keenae haplotype H111 NA...   248   1e-64
DQ996137_2(DQ996137|pid:none) Littorina keenae haplotype H92 NAD...   248   1e-64
AJ132137_7(AJ132137|pid:none) Littorina saxatilis mitochondrial ...   248   1e-64
DQ996208_2(DQ996208|pid:none) Littorina keenae haplotype H163 NA...   248   1e-64
DQ996160_2(DQ996160|pid:none) Littorina keenae haplotype H115 NA...   246   5e-64
DQ238598_7(DQ238598|pid:none) Ilyanassa obsoleta mitochondrion, ...   244   1e-63

 psg: 0.89  gvh: 0.41  alm: 0.38  top: 0.60  tms: 0.00  mit: 0.34  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: mitochondrial
	 28.0 %: cytoplasmic
	 20.0 %: nuclear
	 16.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for SLG476 is mit

>SLG476F.Seq
TTAGTAATTACAGTAGCTCCCCAAAACGACATTTGGCCTCAAGGAAGTACATAGCCTAAA
AAAGCAGTTCCCATAGTCAAAAAAAATAGAATAACCCCAATATTTCAGGTCTCCTGATAG
AGATAAGAACCGTAATAGACCCCTCGACCAATATGAAAATACAAGCAAATAAAAAAGAAA
GATGCTCCGTTAGCGTGGGTAGCTCGTAAGAGCCACCCGTAATTAACATCCCGAGAAATA
TGGACAACAGATCTAAATGCTAAATTAACATCTGCAGTATAATGTATGGACAGAAATAGT
CCTGTAACAATTTGGATAACGAGACACAACCCCAACAATGACCCAAAATTCCACCAAATA
GATAGATTTACCGGCGCGGGAAGATCAATCAAGGCACCATTAATTACCTTTAATACCGGA
TGTACTTTTCGCATAGGTTTCCGCATTTTATCCTTAAGCATCCTCTTTAAAAGGACGAAG
CGACGCATGCTCGAAGAAGCAGATCTTGACAACTACAACTAAAGTTAGCAAAAGAATAAT
TCCTAGGCCAATAATTACGGAAATCAACTCGGGAGAAACCAAACCCCCCCCATAAAA---
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