SLG421
Library SL
(Link to library)
Clone ID SLG421
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U09312-1
Original site URL
Representative seq. ID SLG421E
(Link to Original site)
Representative DNA sequence
>SLG421 (SLG421Q) /CSM/SL/SLG4-A/SLG421Q.Seq.d/
ATTTGTTTTAGTTCTGATATTTGGGACACTGTAACAAAGAAAATATCAAAACCAAAAGAA
TTGAAATCCGTAAACACTTTAAGTTCATACATGCCAGGCACATCTCAAAGAGACATCCTC
ATTCATATTATCTCTGATAGAATGGATACGTGCTTTAAACTAGCACAAGATACAATGAGA
AATTTCGGTGAAGATCAATTAGATATCAAGCAAGAGATTCACGGATTTCGTAGAGTTGAA
GAAAGAGATTTGACCGACTTCATCGACGGTACTGAAAATCCTGACGGTGACGAACTGCGT
ACACAATATGGTCTCGTTGCAGCCGGCCAGCCAAATGAATTTGGCAGTTACGTTTTCACT
CAACGGTATGTTCACAACTTAAAGAAATGGTATCCTGAACCATTATCAGTTCAGCAAGAT
ACAGTTGGAAGAACTAAAAAAGATTCAATTGAAATACCAAGAGATAAACGTCCAATTACT
TCACATGTTTCACGTACTGATCTAAGTGAAAATGGTAAAGATTTGAAAATAGTTAGGCAA
TCTCTCCCCTATGGTCAAATTACTGGTGAAAAAGGTCTGATGTTTATAGCATACGCTTGT
AGTTTACATAATATTGAAAAACAACTTCAAAGTATGTTTGGTCAATTAGATGGTAAACAT
GACCTACTCTTAAAATATACAACACCAGTAACTGGTAGTTTTTATTTTGCACCATCAAAA
AAAGAATTATTAGAATTGTAAATAAACAAACAAATAAATAAATAAATTAAATAAT
sequence update 1999. 7.21
Translated Amino Acid sequence
ICFSSDIWDTVTKKISKPKELKSVNTLSSYMPGTSQRDILIHIISDRMDTCFKLAQDTMR
NFGEDQLDIKQEIHGFRRVEERDLTDFIDGTENPDGDELRTQYGLVAAGQPNEFGSYVFT
QRYVHNLKKWYPEPLSVQQDTVGRTKKDSIEIPRDKRPITSHVSRTDLSENGKDLKIVRQ
SLPYGQITGEKGLMFIAYACSLHNIEKQLQSMFGQLDGKHDLLLKYTTPVTGSFYFAPSK
KELLEL*inkqink*ik*


Translated Amino Acid sequence (All Frames)
Frame A:
ICFSSDIWDTVTKKISKPKELKSVNTLSSYMPGTSQRDILIHIISDRMDTCFKLAQDTMR
NFGEDQLDIKQEIHGFRRVEERDLTDFIDGTENPDGDELRTQYGLVAAGQPNEFGSYVFT
QRYVHNLKKWYPEPLSVQQDTVGRTKKDSIEIPRDKRPITSHVSRTDLSENGKDLKIVRQ
SLPYGQITGEKGLMFIAYACSLHNIEKQLQSMFGQLDGKHDLLLKYTTPVTGSFYFAPSK
KELLEL*inkqink*ik*


Frame B:
fvlvlifgtl*qrkyqnqkn*np*tl*vhtcqahlketssfilsliewiraln*hkiq*e
isvkin*isskrftdfvelkkei*ptsstvlkiltvtncvhnmvslqpasqmnlavtfsl
ngmftt*rngilnhyqfskiqleelkkiqlkyqeinvqllhmfhvli*vkmvki*k*lgn
lspmvkllvkkv*cl*htlvvyiilknnfkvclvn*mvnmtys*niqhq*lvvfilhhqk
kny*nck*tnk*inklnn


Frame C:
lf*f*ylghcnkeniktkrieirkhfkfiharhiskrhphsyyl**ngyvl*tstrynek
fr*rsiryqardsris*s*rkrfdrlhrry*ks*r*rtaytiwsrcsrpak*iwqlrfhs
tvcsqlkemvs*tiissaryswkn*krfn*ntkr*tsnyftcfty*sk*kw*rfens*ai
splwsnyw*krsdvysirl*ft*y*kttskyvwsirw*t*ptlkiyntsnw*flfctikk
riirivnkqtnk*in*i


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLG421 (SLG421Q) /CSM/SL/SLG4-A/SLG421Q.Seq.d/ 1421 0.0
AFI790 (AFI790Q) /CSM/AF/AFI7-D/AFI790Q.Seq.d/ 1400 0.0
SLG596 (SLG596Q) /CSM/SL/SLG5-D/SLG596Q.Seq.d/ 1261 0.0
SSC186 (SSC186Q) /CSM/SS/SSC1-D/SSC186Q.Seq.d/ 1203 0.0
AFM493 (AFM493Q) /CSM/AF/AFM4-D/AFM493Q.Seq.d/ 1134 0.0
SSI695 (SSI695Q) /CSM/SS/SSI6-D/SSI695Q.Seq.d/ 1053 0.0
SLH650 (SLH650Q) /CSM/SL/SLH6-C/SLH650Q.Seq.d/ 785 0.0
SSC795 (SSC795Q) /CSM/SS/SSC7-D/SSC795Q.Seq.d/ 682 0.0
SSD742 (SSD742Q) /CSM/SS/SSD7-B/SSD742Q.Seq.d/ 622 e-177
SSG836 (SSG836Q) /CSM/SS/SSG8-B/SSG836Q.Seq.d/ 551 e-156

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 1419 0.0 1
(AU061874) Dictyostelium discoideum slug cDNA, clone SLG421. 1396 0.0 1
(BJ344215) Dictyostelium discoideum cDNA clone:dda18d23, 3' ... 1324 0.0 1
(C92033) Dictyostelium discoideum slug cDNA, clone SSC186. 1142 0.0 2
(BJ347024) Dictyostelium discoideum cDNA clone:dda25j24, 3' ... 1132 0.0 1
(AU039855) Dictyostelium discoideum slug cDNA, clone SLG596. 864 0.0 2
(C90541) Dictyostelium discoideum slug cDNA, clone SSI695. 1051 0.0 1
(AU039786) Dictyostelium discoideum slug cDNA, clone SLG421. 1013 0.0 1
(AU039366) Dictyostelium discoideum slug cDNA, clone SLH650. 783 0.0 1
(AU037521) Dictyostelium discoideum slug cDNA, clone SSD742. 620 e-173 1
dna update 2009. 5.24
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CP000901_2522(CP000901|pid:none) Yersinia pestis Angola, complet... 254 2e-66
AH0367(AH0367) conserved hypothetical protein YPO3025 [imported]... 252 8e-66
AE009952_1432(AE009952|pid:none) Yersinia pestis KIM, complete g... 252 8e-66
BX936398_2741(BX936398|pid:none) Yersinia pseudotuberculosis IP3... 252 8e-66
AE017042_2559(AE017042|pid:none) Yersinia pestis biovar Microtus... 252 8e-66
AM286415_1135(AM286415|pid:none) Yersinia enterocolitica subsp. ... 252 1e-65
CP000720_1267(CP000720|pid:none) Yersinia pseudotuberculosis IP ... 252 1e-65
CP001600_1187(CP001600|pid:none) Edwardsiella ictaluri 93-146, c... 246 6e-64
CP000826_3446(CP000826|pid:none) Serratia proteamaculans 568, co... 244 2e-63
CP000746_1129(CP000746|pid:none) Actinobacillus succinogenes 130... 231 1e-59
protein update 2009. 7. 5
PSORT

psg: 0.75 gvh: 0.51 alm: 0.47 top: 0.53 tms: 0.00 mit: 0.21 mip: 0.00
nuc: 0.06 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
24.0 %: nuclear
12.0 %: mitochondrial
8.0 %: cytoskeletal
8.0 %: Golgi
4.0 %: vacuolar
4.0 %: endoplasmic reticulum

>> prediction for SLG421 is cyt

5' end seq. ID SLG421F
5' end seq.
>SLG421F.Seq
ATTTGTTTTAGTTCTGATATTTGGGACACTGTAACAAAGAAAATATCAAAACCAAAAGAA
TTGAAATCCGTAAACACTTTAAGTTCATACATGCCAGGCACATCTCAAAGAGACATCCTC
ATTCATATTATCTCTGATAGAATGGATACGTGCTTTAAACTAGCACAAGATACAATGAGA
AATTTCGGTGAAGATCAATTAGATATCAAGCAAGAGATTCACGGATTTCGTAGAGTTGAA
GAAAGAGATTTGACCGACTTCATCGACGGTACTGAAAATCCTGACGGTGACGAACTGCGT
ACACAATATGGTCTCGTTGCAGCCGGCCAGCCAAATGAATTTGGCAGTTACGTTTTCACT
CAACGGTATGTTCACAACTTAAAGAAATGGTATCCTGAACCATTATCAGTTCAGCAAGAT
ACAGTTGGAAGAACTAAAAAAGATTCAATTGAAATACCAAGAGATAAACGTCCAATTACT
TCACATGTTTCACGTACTGATCTAAGTGAAAATGGTAAAGATTTGAAAATAGTTAGGCAA
TCTCTCCCCTATGGTCAAATTACTGGTGAAAAAGGTCTGATGTTTATAGCATACGCTTGT
AGTTTACATAATATTGAAAAACAACTTCAAAGTATGTTTGGTCAATTAGATGGTAAACAT
GACCTACTCTTAAAATATACAACACCAGTAACTGGTAGTTTTTA----------
Length of 5' end seq. 704
3' end seq. ID SLG421Z
3' end seq.
>SLG421Z.Seq
----------TCAAGCAAGAGATTCACGGATTTCGTAGAGTTGAAGAAAGAGATTTGACC
GACTTCATCGACGGTACTGAAAATCCTGACGGTGACGAACTGCGTACACAATATGGTCTC
GTTGCAGCCGGCCAGCCAAATGAATTTGGCAGTTACGTTTTCACTCAACGGTATGTTCAC
AACTTAAAGAAATGGTATCCTGAACCATTATCAGTTCAGCAAGATACAGTTGGAAGAACT
AAAAAAGATTCAATTGAAATACCAAGAGATAAACGTCCAATTACTTCACATGTTTCACGT
ACTGATCTAAGTGAAAATGGTAAAGATTTGAAAATAGTTAGGCAATCTCTCCCCTATGGT
CAAATTACTGGTGAAAAAGGTCTGATGTTTATAGCATACGCTTGTAGTTTACATAATATT
GAAAAACAACTTCAAAGTATGTTTGGTCAATTAGATGGTAAACATGACCTACTCTTAAAA
TATACAACACCAGTAACTGGTAGTTTTTATTTTGCACCATCAAAAAAAGAATTATTAGAA
TTGTAAATAAACAAACAAATAAATAAATAAATTAAATAAT
Length of 3' end seq. 570
Connected seq. ID SLG421P
Connected seq.
>SLG421P.Seq
ATTTGTTTTAGTTCTGATATTTGGGACACTGTAACAAAGAAAATATCAAAACCAAAAGAA
TTGAAATCCGTAAACACTTTAAGTTCATACATGCCAGGCACATCTCAAAGAGACATCCTC
ATTCATATTATCTCTGATAGAATGGATACGTGCTTTAAACTAGCACAAGATACAATGAGA
AATTTCGGTGAAGATCAATTAGATATCAAGCAAGAGATTCACGGATTTCGTAGAGTTGAA
GAAAGAGATTTGACCGACTTCATCGACGGTACTGAAAATCCTGACGGTGACGAACTGCGT
ACACAATATGGTCTCGTTGCAGCCGGCCAGCCAAATGAATTTGGCAGTTACGTTTTCACT
CAACGGTATGTTCACAACTTAAAGAAATGGTATCCTGAACCATTATCAGTTCAGCAAGAT
ACAGTTGGAAGAACTAAAAAAGATTCAATTGAAATACCAAGAGATAAACGTCCAATTACT
TCACATGTTTCACGTACTGATCTAAGTGAAAATGGTAAAGATTTGAAAATAGTTAGGCAA
TCTCTCCCCTATGGTCAAATTACTGGTGAAAAAGGTCTGATGTTTATAGCATACGCTTGT
AGTTTACATAATATTGAAAAACAACTTCAAAGTATGTTTGGTCAATTAGATGGTAAACAT
GACCTACTCTTAAAATATACAACACCAGTAACTGGTAGTTTTTA----------TCAAGC
AAGAGATTCACGGATTTCGTAGAGTTGAAGAAAGAGATTTGACCGACTTCATCGACGGTA
CTGAAAATCCTGACGGTGACGAACTGCGTACACAATATGGTCTCGTTGCAGCCGGCCAGC
CAAATGAATTTGGCAGTTACGTTTTCACTCAACGGTATGTTCACAACTTAAAGAAATGGT
ATCCTGAACCATTATCAGTTCAGCAAGATACAGTTGGAAGAACTAAAAAAGATTCAATTG
AAATACCAAGAGATAAACGTCCAATTACTTCACATGTTTCACGTACTGATCTAAGTGAAA
ATGGTAAAGATTTGAAAATAGTTAGGCAATCTCTCCCCTATGGTCAAATTACTGGTGAAA
AAGGTCTGATGTTTATAGCATACGCTTGTAGTTTACATAATATTGAAAAACAACTTCAAA
GTATGTTTGGTCAATTAGATGGTAAACATGACCTACTCTTAAAATATACAACACCAGTAA
CTGGTAGTTTTTATTTTGCACCATCAAAAAAAGAATTATTAGAATTGTAAATAAACAAAC
AAATAAATAAATAAATTAAATAAT
Length of connected seq. 1274
Full length Seq ID SLG421E
Full length Seq.
>SLG421E.Seq
ATTTGTTTTAGTTCTGATATTTGGGACACTGTAACAAAGAAAATATCAAAACCAAAAGAA
TTGAAATCCGTAAACACTTTAAGTTCATACATGCCAGGCACATCTCAAAGAGACATCCTC
ATTCATATTATCTCTGATAGAATGGATACGTGCTTTAAACTAGCACAAGATACAATGAGA
AATTTCGGTGAAGATCAATTAGATATCAAGCAAGAGATTCACGGATTTCGTAGAGTTGAA
GAAAGAGATTTGACCGACTTCATCGACGGTACTGAAAATCCTGACGGTGACGAACTGCGT
ACACAATATGGTCTCGTTGCAGCCGGCCAGCCAAATGAATTTGGCAGTTACGTTTTCACT
CAACGGTATGTTCACAACTTAAAGAAATGGTATCCTGAACCATTATCAGTTCAGCAAGAT
ACAGTTGGAAGAACTAAAAAAGATTCAATTGAAATACCAAGAGATAAACGTCCAATTACT
TCACATGTTTCACGTACTGATCTAAGTGAAAATGGTAAAGATTTGAAAATAGTTAGGCAA
TCTCTCCCCTATGGTCAAATTACTGGTGAAAAAGGTCTGATGTTTATAGCATACGCTTGT
AGTTTACATAATATTGAAAAACAACTTCAAAGTATGTTTGGTCAATTAGATGGTAAACAT
GACCTACTCTTAAAATATACAACACCAGTAACTGGTAGTTTTTATTTTGCACCATCAAAA
AAAGAATTATTAGAATTGTAAATAAACAAACAAATAAATAAATAAATTAAATAAT
Length of full length seq. 775