SLG383
Library SL
(Link to library)
Clone ID SLG383
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14504-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>SLG383 (SLG383Q) /CSM/SL/SLG3-D/SLG383Q.Seq.d/
GTATCCTCAAGAACCGAAAAAAAAATAGCAGCATTTCAAATATTAATCTATACTTTAATC
GGAAGTATATTTATGTTAATGTCAATTGGTATCTTATATAGGGGGATCCTCTAGAGTCGA
CCTGCAGGCATGCAAGCTTGGXXXXXXXXXX
sequence update 1999. 1.28
Translated Amino Acid sequence
VSSRTEKKIAAFQILIYTLIGSIFMLMSIGILYRGIL*srpagmqa---


Translated Amino Acid sequence (All Frames)
Frame A:
VSSRTEKKIAAFQILIYTLIGSIFMLMSIGILYRGIL*srpagmqa---


Frame B:
ypqepkkk*qhfky*sil*sevylc*cqlvsyiggssrvdlqackl---


Frame C:
ilknrkknssisninlyfnrkyiyvnvnwyli*gdplestcrhasl---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLG383 (SLG383Q) /CSM/SL/SLG3-D/SLG383Q.Seq.d/ 230 4e-60
MIT-GENOME (MIT-GENOMEQ) /CSM/OTHERS/MIT-GENOMEQ.Seq.d/ 151 3e-36
FC-IC1565 (FC-IC1565Q) /CSM/FC-IC/FC-IC1565Q.Seq.d/ 151 3e-36
FC-IC1561 (FC-IC1561Q) /CSM/FC-IC/FC-IC1561Q.Seq.d/ 137 5e-32
SLH147 (SLH147Q) /CSM/SL/SLH1-B/SLH147Q.Seq.d/ 84 6e-16
SLG623 (SLG623Q) /CSM/SL/SLG6-A/SLG623Q.Seq.d/ 84 6e-16
SLH429 (SLH429Q) /CSM/SL/SLH4-B/SLH429Q.Seq.d/ 82 3e-15
SLG834 (SLG834Q) /CSM/SL/SLG8-B/SLG834Q.Seq.d/ 82 3e-15
SLH682 (SLH682Q) /CSM/SL/SLH6-D/SLH682Q.Seq.d/ 80 1e-14
SLG825 (SLG825Q) /CSM/SL/SLG8-B/SLG825Q.Seq.d/ 80 1e-14

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AB000109|AB000109.1 Dictyostelium discoideum mitochondrial DNA, complete sequence. 151 1e-37 2
D16579|D16579.1 Dictyostelium discoideum mitochondrial DNA for NADH dehydrogenase subunits and cytochrome oxidase subunit ,complete cds. 151 3e-33 1
BD181437|BD181437.1 Method for synthesizing the nucleic acid. 80 4e-29 2
BD091650|BD091650.1 Method for synthesizing the nucleic acid. 80 4e-29 2
BD083024|BD083024.1 Method of detecting difference between gene sequences. 80 4e-29 2
BD181439|BD181439.1 Method for synthesizing the nucleic acid. 80 8e-29 2
BD091652|BD091652.1 Method for synthesizing the nucleic acid. 80 8e-29 2
BD083026|BD083026.1 Method of detecting difference between gene sequences. 80 8e-29 2
BD181438|BD181438.1 Method for synthesizing the nucleic acid. 80 8e-29 2
BD091651|BD091651.1 Method for synthesizing the nucleic acid. 80 8e-29 2
dna update 2004. 1. 9
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

DQ336395_1(DQ336395|pid:none) Dictyostelium citrinum mitochondri... 60 2e-08
(Q2LCP7) RecName: Full=NADH-ubiquinone oxidoreductase chain 4; ... 60 2e-08
DQ287690_11(DQ287690|pid:none) Blastocladiella emersonii mitocho... 39 0.043
DQ640649_10(DQ640649|pid:none) Briareum asbestinum mitochondrion... 39 0.056
EF672731_7(EF672731|pid:none) Acanella eburnea mitochondrion, co... 39 0.073
EF622534_7(EF622534|pid:none) Keratoisidinae sp. BAL208-1 mitoch... 39 0.073
EF081250_8(EF081250|pid:none) Oscarella carmela mitochondrion, c... 38 0.096
CR954200_35(CR954200|pid:none) Ostreococcus tauri mitochondrion,... 38 0.12
EU237483_11(EU237483|pid:none) Halisarca dujardini mitochondrion... 37 0.21
AF295546_43(AF295546|pid:none) Malawimonas jakobiformis mitochon... 37 0.21
protein update 2009. 6. 4
PSORT

psg: 0.97 gvh: 0.43 alm: 0.27 top: 0.40 tms: 0.07 mit: 0.39 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.60 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

40.0 %: mitochondrial
20.0 %: nuclear
12.0 %: cytoplasmic
12.0 %: Golgi
8.0 %: endoplasmic reticulum
4.0 %: vacuolar
4.0 %: extracellular, including cell wall

>> prediction for SLG383 is mit

5' end seq. ID SLG383F
5' end seq.
>SLG383F.Seq
GTATCCTCAAGAACCGAAAAAAAAATAGCAGCATTTCAAATATTAATCTATACTTTAATC
GGAAGTATATTTATGTTAATGTCAATTGGTATCTTATATAGGGGGATCCTCTAGAGTCGA
CCTGCAGGCATGCAAGCTTGG
Length of 5' end seq. 141
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -