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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLG376
Library SL
(Link to library)
Clone ID SLG376
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10808-1
Original site URL
Representative seq. ID SLG376E
(Link to Original site)
Representative DNA sequence 
>SLG376 (SLG376Q) /CSM/SL/SLG3-D/SLG376Q.Seq.d/
AACAAGAATAGACCATTCACCACAGTTCCCTTGGTTAAATTGGGTGATAACTTTAAAAAG
GTTTCAGATTATCAAGCTCGTATCAAAGGTATTCCAGATATTTTGGAATTGGATCAACTC
ACCGTTTCTGGTGATATAACCTTTGGTCCAGATATGGTCCTCAAAGGCACTGTTATCATT
GTTGCTAATCATGGTTCAAGAATTGATATTCCTGAAGGTTCAGAATTTGAAAATAAAGTA
GTTAGTGGTAATTTACATTGTGGTGCTTTGTAAATAAATAAATGAATAAAAAAAAAAAAA
TAAATACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAATAAAATAAAATTCAAT
ATAT
sequence update 1998. 6.16
Translated Amino Acid sequence 
NKNRPFTTVPLVKLGDNFKKVSDYQARIKGIPDILELDQLTVSGDITFGPDMVLKGTVII
VANHGSRIDIPEGSEFENKVVSGNLHCGAL*ink*ikkkk*iqkkkkkkkkkk*nkikfn
i
Translated Amino Acid sequence (All Frames) 
Frame A:
NKNRPFTTVPLVKLGDNFKKVSDYQARIKGIPDILELDQLTVSGDITFGPDMVLKGTVII
VANHGSRIDIPEGSEFENKVVSGNLHCGAL*ink*ikkkk*iqkkkkkkkkkk*nkikfn
i


Frame B:
tridhspqfpwlnwvitlkrfqiiklvskvfqifwnwinspflvi*plvqiwsskallsl
llimvqeliflkvqnlkik*lvviyivvlck*ine*kkknkykkkkkkkkkknkik*nsi
y


Frame C:
qe*tihhsslg*ig**l*kgfrlsssyqrysryfgigsthrfw*ynlwsrygpqrhcyhc
c*swfkn*ys*rfri*k*ss*w*ftlwcfvnk*mnkkkkintkkkkkkkkkkik*nkiqy
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLG376 (SLG376Q) /CSM/SL/SLG3-D/SLG376Q.Seq.d/                        569   e-161
SSM555 (SSM555Q) /CSM/SS/SSM5-C/SSM555Q.Seq.d/                        561   e-159
SSH265 (SSH265Q) /CSM/SS/SSH2-C/SSH265Q.Seq.d/                        561   e-159
SSF808 (SSF808Q) /CSM/SS/SSF8-A/SSF808Q.Seq.d/                        561   e-159
SSD633 (SSD633Q) /CSM/SS/SSD6-B/SSD633Q.Seq.d/                        561   e-159
SSA730 (SSA730Q) /CSM/SS/SSA7-B/SSA730Q.Seq.d/                        561   e-159
SLJ496 (SLJ496Q) /CSM/SL/SLJ4-D/SLJ496Q.Seq.d/                        557   e-158
SSD572 (SSD572Q) /CSM/SS/SSD5-C/SSD572Q.Seq.d/                        555   e-157
CHB571 (CHB571Q) /CSM/CH/CHB5-C/CHB571Q.Seq.d/                        494   e-139
CFD492 (CFD492Q) /CSM/CF/CFD4-D/CFD492Q.Seq.d/                        474   e-133
own update 2003.10.30
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU039768) Dictyostelium discoideum slug cDNA, clone SLG376.      569   e-158  1
(AF150929) Dictyostelium discoideum UDP-glucose pyrophosphor...   561   e-156  1
(AU038095) Dictyostelium discoideum slug cDNA, clone SSH265.      561   e-156  1
(AU037432) Dictyostelium discoideum slug cDNA, clone SSD633.      561   e-156  1
(AU036999) Dictyostelium discoideum slug cDNA, clone SSA730.      561   e-156  1
(C93100) Dictyostelium discoideum slug cDNA, clone SSM555.        561   e-156  1
(C92667) Dictyostelium discoideum slug cDNA, clone SSF808.        561   e-156  1
(AU037391) Dictyostelium discoideum slug cDNA, clone SSD572.      555   e-154  1
(AU060370) Dictyostelium discoideum slug cDNA, clone SLJ496.      513   e-141  1
(BJ377738) Dictyostelium discoideum cDNA clone:ddc25m17, 3' ...   494   e-135  1
dna update 2009. 5.24
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54YZ0) RecName: Full=UTP--glucose-1-phosphate uridylyltransfer...   181   5e-45
Z81568_9(Z81568|pid:none) Caenorhabditis elegans Cosmid K08E3, c...   119   3e-26
T23457(T23457) hypothetical protein K08E3.5a - Caenorhabditis el...   119   3e-26
Z81568_8(Z81568|pid:none) Caenorhabditis elegans Cosmid K08E3, c...   119   3e-26
Z81568_10(Z81568|pid:none) Caenorhabditis elegans Cosmid K08E3, ...   119   3e-26
BC026626_1(BC026626|pid:none) Mus musculus UDP-glucose pyrophosp...   119   3e-26
S35692(S35692)UTP-glucose-1-phosphate uridylyltransferase (EC 2....   119   3e-26
(Q91ZJ5) RecName: Full=UTP--glucose-1-phosphate uridylyltransfer...   119   3e-26
S62599(S62599)UTP-glucose-1-phosphate uridylyltransferase (EC 2....   119   3e-26
AK153885_1(AK153885|pid:none) Mus musculus 2 days neonate thymus...   119   3e-26
protein update 2009. 7. 5
PSORT 

 psg: 0.90  gvh: 0.31  alm: 0.37  top: 0.47  tms: 0.00  mit: 0.30  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: cytoplasmic
	 32.0 %: nuclear
	 20.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: peroxisomal

>> prediction for SLG376 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SLG376E
Full length Seq. 
>SLG376E.Seq
AACAAGAATAGACCATTCACCACAGTTCCCTTGGTTAAATTGGGTGATAACTTTAAAAAG
GTTTCAGATTATCAAGCTCGTATCAAAGGTATTCCAGATATTTTGGAATTGGATCAACTC
ACCGTTTCTGGTGATATAACCTTTGGTCCAGATATGGTCCTCAAAGGCACTGTTATCATT
GTTGCTAATCATGGTTCAAGAATTGATATTCCTGAAGGTTCAGAATTTGAAAATAAAGTA
GTTAGTGGTAATTTACATTGTGGTGCTTTGTAAATAAATAAATGAATAAAAAAAAAAAAA
TAAATACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAATAAAATAAAATTCAAT
ATAT
Length of full length seq. 364