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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLG272
Library SL
(Link to library)
Clone ID SLG272
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12870-1
Original site URL
Representative seq. ID SLG272P
(Link to Original site)
Representative DNA sequence 
>SLG272 (SLG272Q) /CSM/SL/SLG2-C/SLG272Q.Seq.d/
CCCCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTGGGTTTTAAAAAATATACACTCTTTTCTTGGTTTTTATTTTTATTTTTATTTTTT
TATTGTGGTAATATTGGACCGGCTGCTAAAAGTTCTGGTGAAGCTTTATCTTGGAATTTT
TTGAAATTTTCAATAAATAATTTAGCCAATTTATGCATAGTTGAAACATATTTCTCTTTA
TCAGCCCAACCATTAATTGGCATTAAAATTTCAGATGGAACACCTGGACAACTATTTGGT
ACTTGGAAACCGAAAACATCCATTTTAGTGGTTGGAATTTTTTCAAGTTCTCCACTGTGA
ATGGCATCGATGATGGCACGAGTGTAGGCCAATTTAATACGAGAACCAACACCATGAGAA
CCACCAGTCCAACCAGTATTAATTAACCAAGCACGAGCTGAATGTTTATGGAGTTGAGAA
GCCAACATTTCAGCGTATTTGGTTGGATGCCATACGATGAATGGTTCACCATAACAACTT
GAAAAGGTTGCAGTTGGTTCGGTGACACCAACTTCAGTACCGGCAACTTTGGXXXXXXXX
XXCCTTACGAGCGAAATCAATGGCGATTGATGAGCTTGAAGACATACCCTTAGGTAACGA
TTTGCTGGGAATTGACCTGCATTGTAAATGGTGTAATCTGGTTCTCCAAAATTTCTTAAC
TCTTCTCTATTGGCTGGACGAATTAACATATTGTGCATAAAGAGAGCATGGTAGGCACGT
GCGCAAATGACTCTAACCTTGATACGATATTTTGGATCCCATCCTGCGTAACCATCGATA
ACGTAGATCTTTTCTTGAGTGTTCAAATAATCGATGGCTCTTTCACGATTGATCATAAAT
GAAAGATCATCCATTGCAATATTGACTGGTCCCCACCAAATATCATCTTGTGATGATGGT
TCCTTTACAATTCTCTTATCCTTTGGTGATCTTCCAGTCTTTACACCTGATCTGGTTACC
AATGCACCTGTACTTGTAATTGCTGATCCATGTTCAAATGCCAATGCTTGTTCATATAAT
ACTGCTACTGCTGGATTATGGAAAATCTTTGCATTACCTGAAAAATGTTCATCTAAATAA
ATTGAATCAGATTCTAATTCGGTAATATGATATCCTTTTGGGGTATAATCTGCTGTTGAA
GATTTTAATGATTTATTAATTGATTCTGCTACGGCTTGATTCATTCTTTTTTTAATTTAA
TAAAATTTTATAAAAAAAAAAA
sequence update 1999. 1.28
Translated Amino Acid sequence 
ppplffffffffffffffffflgfkkytlfswflflflffycgnigpaakssgealswnf
lkfsinnlanlcivetyfslsaqpligikisdgtpgqlfgtwkpktsilvvgifssspl*
masmmarv*anlireptp*eppvqpvlinqaraeclws*eanisaylvgchtmngsp*QL
EKVAVGSVTPTSVPATL---

---LRAKSMAIDELEDIPLGNDLLGIDLHCKWCNLVLQNFLTLLYWLDELTYCA*rehgr
hvrk*l*p*ydildpilrnhr*rrsflecsnnrwlfhd*s*mkdhplqy*lvptkyhlvm
mvplqfsyplvifqslhliwlpmhlyl*llihvqmpmlvhiilllldygkslhylknvhl
nklnqilir*ydillgynlllkilmiy*lillrldsfff*fnkil*kkk
Translated Amino Acid sequence (All Frames) 
Frame A:
ppplffffffffffffffffflgfkkytlfswflflflffycgnigpaakssgealswnf
lkfsinnlanlcivetyfslsaqpligikisdgtpgqlfgtwkpktsilvvgifssspl*
masmmarv*anlireptp*eppvqpvlinqaraeclws*eanisaylvgchtmngsp*QL
EKVAVGSVTPTSVPATL---

---pyernqwrlmslktyp*vticweltcivngviwfskis*lfsigwtn*hivhkesmv
gtcandsnldtifwipscvtidnvdlflsvqiidgsftidhk*kiihcnidwsppniil*
*wflynslilw*ssslyt*sgyqctctcnc*smfkcqclfi*ycycwimenlcit*kmfi
*in*irf*fgnmisfwgiicc*rf**fin*fcyglihsffnlikfykkk

Frame B:
pppffffffffffffffffffwvlknihsflgfyfyfyffivvildrllkvlvklylgif
*nfq*ii*piya*lkhislyqpnh*lalkfqmehldnylvlgnrkhpf*wleffqvlhce
whr*whecrpi*yenqhhenhqsnqy*ltkhelnvygvekptfqriwldair*mvhhnnl
krlqlvr*hqlqyrqlw---

---ltseingd**a*rhtlr*rfagn*pal*mv*sgspkflnssllagrinilcikraw*
araqmtltliryfgshpa*psit*ifs*vfk*smalsrliinerssiailtgphqisscd
dgsftillsfgdlpvftpdlvtnapvlviadpcsnanacsyntataglwkifalpekcss
k*iesdsnsvi*ypfgv*savedfndllidsata*filfli**nfikkk

Frame C:
pppffffffffffffffffffgf*kiytlflvfifififllw*ywtgc*kfw*sfileff
eifnk*fsqfmhs*niflfisptinwh*nfrwntwttiwyletenihfsgwnffkfstvn
giddgtsvgqfntrtntmrttsptsin*psts*mfmelrsqhfsvfgwmpydewftitt*
kgcswfgdtnfstgnf---

---LRAKSMAIDELEDIPLGNDLLGIDLHCKWCNLVLQNFLTLLYWLDELTYCA*rehgr
hvrk*l*p*ydildpilrnhr*rrsflecsnnrwlfhd*s*mkdhplqy*lvptkyhlvm
mvplqfsyplvifqslhliwlpmhlyl*llihvqmpmlvhiilllldygkslhylknvhl
nklnqilir*ydillgynlllkilmiy*lillrldsfff*fnkil*kkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLG272 (SLG272Q) /CSM/SL/SLG2-C/SLG272Q.Seq.d/                       2179   0.0
CFB335 (CFB335Q) /CSM/CF/CFB3-B/CFB335Q.Seq.d/                       1215   0.0
AFO837 (AFO837Q) /CSM/AF/AFO8-B/AFO837Q.Seq.d/                       1215   0.0
SFC665 (SFC665Q) /CSM/SF/SFC6-C/SFC665Q.Seq.d/                       1160   0.0
CHD612 (CHD612Q) /CSM/CH/CHD6-A/CHD612Q.Seq.d/                       1152   0.0
CFF751 (CFF751Q) /CSM/CF/CFF7-C/CFF751Q.Seq.d/                       1063   0.0
AFL109 (AFL109Q) /CSM/AF/AFL1-A/AFL109Q.Seq.d/                       1059   0.0
SLC233 (SLC233Q) /CSM/SL/SLC2-B/SLC233Q.Seq.d/                       1029   0.0
SFF434 (SFF434Q) /CSM/SF/SFF4-B/SFF434Q.Seq.d/                        926   0.0
CFG166 (CFG166Q) /CSM/CF/CFG1-C/CFG166Q.Seq.d/                        926   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU039727) Dictyostelium discoideum slug cDNA, clone SLG272.     1326   0.0    1
(BJ328993) Dictyostelium discoideum cDNA clone:dda30j10, 5' ...  1213   0.0    2
(BJ388626) Dictyostelium discoideum cDNA clone:dds6a18, 5' e...  1187   0.0    1
(BJ359045) Dictyostelium discoideum cDNA clone:ddc12f13, 5' ...  1104   0.0    1
(BJ359930) Dictyostelium discoideum cDNA clone:ddc3f09, 5' e...  1100   0.0    3
(BJ363907) Dictyostelium discoideum cDNA clone:ddc29g04, 5' ...  1066   0.0    2
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572...   981   0.0    4
(BJ328108) Dictyostelium discoideum cDNA clone:dda23a03, 5' ...   971   0.0    2
(AU060917) Dictyostelium discoideum slug cDNA, clone SLC233.      942   0.0    2
(AU061832) Dictyostelium discoideum slug cDNA, clone SLG272.      930   0.0    1
dna update 2009. 5.18
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FJ826618_1(FJ826618|pid:none) Epichloe festucae strain E2368 pho...   229   1e-58
CU633895_124(CU633895|pid:none) Podospora anserina genomic DNA c...   227   6e-58
AE017349_359(AE017349|pid:none) Cryptococcus neoformans var. neo...   223   1e-56
AP007155_153(AP007155|pid:none) Aspergillus oryzae RIB40 genomic...   219   2e-55
(Q96UL8) RecName: Full=Phosphoenolpyruvate carboxykinase [ATP]; ...   215   2e-54
FN392319_1530(FN392319|pid:none) Pichia pastoris GS115 chromosom...   215   3e-54
AM920427_936(AM920427|pid:none) Penicillium chrysogenum Wisconsi...   214   4e-54
AB075548_1(AB075548|pid:none) Toxoplasma gondii pck mRNA for pho...   212   2e-53
FM992695_19(FM992695|pid:none) Candida dubliniensis CD36 chromos...   209   2e-52
(Q753M0) RecName: Full=Phosphoenolpyruvate carboxykinase [ATP]; ...   209   2e-52
protein update 2009. 6. 4
PSORT 

 psg: 0.88  gvh: 0.48  alm: 0.45  top: 0.33  tms: 0.00  mit: 0.30  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: endoplasmic reticulum
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SLG272 is nuc
5' end seq. ID SLG272F
5' end seq. 
>SLG272F.Seq
CCCCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTGGGTTTTAAAAAATATACACTCTTTTCTTGGTTTTTATTTTTATTTTTATTTTTT
TATTGTGGTAATATTGGACCGGCTGCTAAAAGTTCTGGTGAAGCTTTATCTTGGAATTTT
TTGAAATTTTCAATAAATAATTTAGCCAATTTATGCATAGTTGAAACATATTTCTCTTTA
TCAGCCCAACCATTAATTGGCATTAAAATTTCAGATGGAACACCTGGACAACTATTTGGT
ACTTGGAAACCGAAAACATCCATTTTAGTGGTTGGAATTTTTTCAAGTTCTCCACTGTGA
ATGGCATCGATGATGGCACGAGTGTAGGCCAATTTAATACGAGAACCAACACCATGAGAA
CCACCAGTCCAACCAGTATTAATTAACCAAGCACGAGCTGAATGTTTATGGAGTTGAGAA
GCCAACATTTCAGCGTATTTGGTTGGATGCCATACGATGAATGGTTCACCATAACAACTT
GAAAAGGTTGCAGTTGGTTCGGTGACACCAACTTCAGTACCGGCAACTTTGG--------
--
Length of 5' end seq. 592
3' end seq. ID SLG272Z
3' end seq. 
>SLG272Z.Seq
----------CCTTACGAGCGAAATCAATGGCGATTGATGAGCTTGAAGACATACCCTTA
GGTAACGATTTGCTGGGAATTGACCTGCATTGTAAATGGTGTAATCTGGTTCTCCAAAAT
TTCTTAACTCTTCTCTATTGGCTGGACGAATTAACATATTGTGCATAAAGAGAGCATGGT
AGGCACGTGCGCAAATGACTCTAACCTTGATACGATATTTTGGATCCCATCCTGCGTAAC
CATCGATAACGTAGATCTTTTCTTGAGTGTTCAAATAATCGATGGCTCTTTCACGATTGA
TCATAAATGAAAGATCATCCATTGCAATATTGACTGGTCCCCACCAAATATCATCTTGTG
ATGATGGTTCCTTTACAATTCTCTTATCCTTTGGTGATCTTCCAGTCTTTACACCTGATC
TGGTTACCAATGCACCTGTACTTGTAATTGCTGATCCATGTTCAAATGCCAATGCTTGTT
CATATAATACTGCTACTGCTGGATTATGGAAAATCTTTGCATTACCTGAAAAATGTTCAT
CTAAATAAATTGAATCAGATTCTAATTCGGTAATATGATATCCTTTTGGGGTATAATCTG
CTGTTGAAGATTTTAATGATTTATTAATTGATTCTGCTACGGCTTGATTCATTCTTTTTT
TAATTTAATAAAATTTTATAAAAAAAAAAA
Length of 3' end seq. 680
Connected seq. ID SLG272P
Connected seq. 
>SLG272P.Seq
CCCCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTGGGTTTTAAAAAATATACACTCTTTTCTTGGTTTTTATTTTTATTTTTATTTTTT
TATTGTGGTAATATTGGACCGGCTGCTAAAAGTTCTGGTGAAGCTTTATCTTGGAATTTT
TTGAAATTTTCAATAAATAATTTAGCCAATTTATGCATAGTTGAAACATATTTCTCTTTA
TCAGCCCAACCATTAATTGGCATTAAAATTTCAGATGGAACACCTGGACAACTATTTGGT
ACTTGGAAACCGAAAACATCCATTTTAGTGGTTGGAATTTTTTCAAGTTCTCCACTGTGA
ATGGCATCGATGATGGCACGAGTGTAGGCCAATTTAATACGAGAACCAACACCATGAGAA
CCACCAGTCCAACCAGTATTAATTAACCAAGCACGAGCTGAATGTTTATGGAGTTGAGAA
GCCAACATTTCAGCGTATTTGGTTGGATGCCATACGATGAATGGTTCACCATAACAACTT
GAAAAGGTTGCAGTTGGTTCGGTGACACCAACTTCAGTACCGGCAACTTTGG--------
--CCTTACGAGCGAAATCAATGGCGATTGATGAGCTTGAAGACATACCCTTAGGTAACGA
TTTGCTGGGAATTGACCTGCATTGTAAATGGTGTAATCTGGTTCTCCAAAATTTCTTAAC
TCTTCTCTATTGGCTGGACGAATTAACATATTGTGCATAAAGAGAGCATGGTAGGCACGT
GCGCAAATGACTCTAACCTTGATACGATATTTTGGATCCCATCCTGCGTAACCATCGATA
ACGTAGATCTTTTCTTGAGTGTTCAAATAATCGATGGCTCTTTCACGATTGATCATAAAT
GAAAGATCATCCATTGCAATATTGACTGGTCCCCACCAAATATCATCTTGTGATGATGGT
TCCTTTACAATTCTCTTATCCTTTGGTGATCTTCCAGTCTTTACACCTGATCTGGTTACC
AATGCACCTGTACTTGTAATTGCTGATCCATGTTCAAATGCCAATGCTTGTTCATATAAT
ACTGCTACTGCTGGATTATGGAAAATCTTTGCATTACCTGAAAAATGTTCATCTAAATAA
ATTGAATCAGATTCTAATTCGGTAATATGATATCCTTTTGGGGTATAATCTGCTGTTGAA
GATTTTAATGATTTATTAATTGATTCTGCTACGGCTTGATTCATTCTTTTTTTAATTTAA
TAAAATTTTATAAAAAAAAAAA
Length of connected seq. 1272
Full length Seq ID -
Full length Seq. -
Length of full length seq. -