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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLG243
Library SL
(Link to library)
Clone ID SLG243
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15203-1
Original site URL
Representative seq. ID SLG243E
(Link to Original site)
Representative DNA sequence 
>SLG243 (SLG243Q) /CSM/SL/SLG2-B/SLG243Q.Seq.d/
GCAGTGGCTTTGATTTATTCATTTGCAGATGTTAGTGGTGCACATTTCAATCCAGCAGTG
ACCTTTGCAACATGTGTCACCAGAAAGACATCAATAACCAAAGGTTTGATGNATGTCGGT
GCCCAATTGGTAGGTTCAGTATTGGCTTCGTTGATTTTGTTGGCAACATTCCCAGGTAAC
TTCCCTGGCGATAAGAATGCAGCTAGTGCCGTTGCAATCGCCCCATCAACTGATGCAAAC
ATCGGTAATGCTTTCTTGACAGAGTTGGTTTTAACTTTTATTTTAGTATACGTCATTTTC
GCTGTCGCTTTCGATACCGTTGATAATAGTGTAAAAACAAAGGTCGTAGGTAAATCCTCA
TCAAATAATCTCACAATCTATACTACCTCTGGTCAAACTAAAGCTGGTTTCGCACCAATT
GCAATCGGTTTCACTTTAGGTTTCCTTTGTTTCTTGGGTGGTTCAGTCTCTGGTGGTGCT
TTCAATCCTGCTAGAGTTTTCGGTACTGCTTTAGTTGGTAATAATTGGACTCGTCATTGG
ATGTATTGGATAGCTGACTTTTTAGGTGCTGGTTTAGCTGGTTTTGCTCAAAAATTCTTT
TCATCTACTCATAAATAAATTTC
sequence update 1999. 6.18
Translated Amino Acid sequence 
AVALIYSFADVSGAHFNPAVTFATCVTRKTSITKGLMXVGAQLVGSVLASLILLATFPGN
FPGDKNAASAVAIAPSTDANIGNAFLTELVLTFILVYVIFAVAFDTVDNSVKTKVVGKSS
SNNLTIYTTSGQTKAGFAPIAIGFTLGFLCFLGGSVSGGAFNPARVFGTALVGNNWTRHW
MYWIADFLGAGLAGFAQKFFSSTHK*i
Translated Amino Acid sequence (All Frames) 
Frame A:
AVALIYSFADVSGAHFNPAVTFATCVTRKTSITKGLMXVGAQLVGSVLASLILLATFPGN
FPGDKNAASAVAIAPSTDANIGNAFLTELVLTFILVYVIFAVAFDTVDNSVKTKVVGKSS
SNNLTIYTTSGQTKAGFAPIAIGFTLGFLCFLGGSVSGGAFNPARVFGTALVGNNWTRHW
MYWIADFLGAGLAGFAQKFFSSTHK*i


Frame B:
qwl*fihlqmlvvhisiqq*plqhvsperhq*pkv*xmsvpnw*vqywlr*fcwqhsqvt
slairmqlvplqsphqlmqtsvmls*qswf*llf*ytsfslslsipliiv*kqrs*vnph
qiisqsilplvklklvshqlqsvsl*vsfvswvvqslvvlsillefsvll*lviiglvig
cig*ltf*vlv*lvllknsfhllinkf


Frame C:
sgfdlficrc*wctfqsssdlcnmchqkdinnqrfdxcrcpigrfsigfvdfvgnipr*l
pwr*ecs*crcnrpin*ckhr*cfldrvgfnfyfsirhfrcrfryr***cknkgrr*ili
k*shnlyylwsn*swfrtncnrfhfrfplflgwfslwwcfqsc*sfrycfsw**ldssld
vlds*lfrcwfswfcskilfiys*inf
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLG243 (SLG243Q) /CSM/SL/SLG2-B/SLG243Q.Seq.d/                       1229   0.0
FC-BK19 (FC-BK19Q) /CSM/FC/FC-BK/FC-BK19Q.Seq.d/                     1166   0.0
SFJ471 (SFJ471Q) /CSM/SF/SFJ4-C/SFJ471Q.Seq.d/                        105   8e-22
VHO206 (VHO206Q) /CSM/VH/VHO2-A/VHO206Q.Seq.d/                         36   0.61
VSK279 (VSK279Q) /CSM/VS/VSK2-D/VSK279Q.Seq.d/                         34   2.4
VSK148 (VSK148Q) /CSM/VS/VSK1-B/VSK148Q.Seq.d/                         34   2.4
VSJ233 (VSJ233Q) /CSM/VS/VSJ2-B/VSJ233Q.Seq.d/                         34   2.4
VSI652 (VSI652Q) /CSM/VS/VSI6-C/VSI652Q.Seq.d/                         34   2.4
VSG152 (VSG152Q) /CSM/VS/VSG1-C/VSG152Q.Seq.d/                         34   2.4
VSF311 (VSF311Q) /CSM/VS/VSF3-A/VSF311Q.Seq.d/                         34   2.4
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU061825) Dictyostelium discoideum slug cDNA, clone SLG243.     1223   0.0    1
(AU039712) Dictyostelium discoideum slug cDNA, clone SLG243.     1213   0.0    1
(AU284783) Dictyostelium discoideum gamete cDNA clone:FC-BK1...   743   0.0    1
(BJ401876) Dictyostelium discoideum cDNA clone:dds19n18, 3' ...   105   2e-18  1
(AC234650) Mustela putorius furo clone CH237-204I18, WORKING...    48   0.40   1
(AC231551) Mustela putorius furo clone CH237-32H13, WORKING ...    48   0.40   1
(EX969119) CAGO4353.rev CAGO Karenia brevis Karbr Stressed (...    48   0.40   1
(EX968438) CAGO3969.fwd CAGO Karenia brevis Karbr Stressed (...    48   0.40   1
(EX968437) CAGO3969.rev CAGO Karenia brevis Karbr Stressed (...    48   0.40   1
(EX965930) CAGO2586.rev CAGO Karenia brevis Karbr Stressed (...    48   0.40   1
dna update 2009. 5.18
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB292479_1(AB292479|pid:none) Amoeba proteus AQP gene for aquapo...    96   8e-19
FN178527_1(FN178527|pid:none) Eisenia andrei mRNA for aquaporin ...    95   1e-18
EF086657_1(EF086657|pid:none) Picea sitchensis clone WS02749_M14...    93   7e-18
FN178632_1(FN178632|pid:none) Lumbricus rubellus mRNA for water-...    92   9e-18
JQ2287(JQ2287) SPCP1 protein - soybean  &L12257_1(L12257|pid:none)     91   2e-17
AE017195_166(AE017195|pid:none) Bacillus cereus ATCC 10987 plasm...    91   3e-17
CP000750_4300(CP000750|pid:none) Kineococcus radiotolerans SRS30...    91   3e-17
(O22588) RecName: Full=Probable aquaporin TIP3-2; AltName: Full=...    90   5e-17
AL954739_2(AL954739|pid:none) Zebrafish DNA sequence from clone ...    90   6e-17
BC078213_1(BC078213|pid:none) Danio rerio si:ch211-192k9.1, mRNA...    90   6e-17
protein update 2009. 7. 5
PSORT 

 psg: 0.75  gvh: 0.62  alm: 0.20  top: 0.27  tms: 0.20  mit: 0.21  mip: 0.06
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 24.0 %: mitochondrial
	 20.0 %: plasma membrane
	  8.0 %: nuclear
	  8.0 %: extracellular, including cell wall
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SLG243 is end
5' end seq. ID SLG243F
5' end seq. 
>SLG243F.Seq
GCAGTGGCTTTGATTTATTCATTTGCAGATGTTAGTGGTGCACATTTCAATCCAGCAGTG
ACCTTTGCAACATGTGTCACCAGAAAGACATCAATAACCAAAGGTTTGATGGATNTCGGT
GCCCAATTGGTAGGTTCAGTATTGGCTTCGTTGATTTTGTTGGCAACATTCCCAGGTAAC
TTCCCTGGCGATAAGAATGCAGCTAGTGCCGTTGCAATCGCCCCATCAACTGATGCAAAC
ATCGGTAATGCTTTCTTGACAGAGTTGGTTTTAACTTTTATTTTAGTATACGTCATTTTC
GCTGTCGCTTTCGATACCGTTGATAATAGTGTAAAAACAAAGGTCGTAGGTAAATCCTCA
TCAAATAATCTCACAATCTATACTACCTCTGGTCAAACTAAAGCTGGTTTCGCACCAATT
GCAATCGGTTTCACTTTAGGTTTCCTTTGTTTCTTGGGTGGTTCAGTCTCTGGTGGTGCT
TTCAATCCTGCTAGAGTTTTCGGTACTGCTTTAGTTGGTAATAATTGGACTCGTCATTGG
ATGTATTGGATAGCTGACTTTTTAGGTGCTGGTTTAGCTGGTTTTGCTCAAAAATTCTTT
TCATCTACTCATAAATAAATTTC
Length of 5' end seq. 623
3' end seq. ID SLG243Z
3' end seq. 
>SLG243Z.Seq
----------TTTGATTTATTCATTTGCAGATGTTAGTGGTGCACATTTCAATCCAGCAG
TGACCTTTGCAACATGTGTCACCAGAAAGACATCAATAACCAAAGGTTTGATGTATGTCG
GTGCCCAATTGGTAGGTTCAGTATTGGCTTCGTTGATTTTGTTGGCAACATTCCCAGGTA
ACTTCCCTGGCGATAAGAATGCAGCTAGTGCCGTTGCAATCGCCCCATCAACTGATGCAA
ACATCGGTAATGCTTTCTTGACAGAGTTGGTTTTAACTTTTATTTTAGTATACGTCATTT
TCGCTGTCGCTTTCGATACCGTTGATAATAGTGTAAAAACAAAGGTCGTAGGTAAATCCT
CATCAAATAATCTCACAATCTATACTACCTCTGGTCAAACTAAAGCTGGTTTCGCACCAA
TTGCAATCGGTTTCACTTTAGGTTTCCTTTGTTTCTTGGGTGGTTCAGTCTCTGGTGGTG
CTTTCAATCCTGCTAGAGTTTTCGGTACTGCTTTAGTTGGTAATAATTGGACTCGTCATT
GGATGTATTGGATAGCTGACTTTTTAGGTGCTGGTTTAGCTGGTTTTGCTCAAAAATTCT
TTTCATCTACTCATAAATAAATTTC
Length of 3' end seq. 615
Connected seq. ID SLG243P
Connected seq. 
>SLG243P.Seq
GCAGTGGCTTTGATTTATTCATTTGCAGATGTTAGTGGTGCACATTTCAATCCAGCAGTG
ACCTTTGCAACATGTGTCACCAGAAAGACATCAATAACCAAAGGTTTGATGGATNTCGGT
GCCCAATTGGTAGGTTCAGTATTGGCTTCGTTGATTTTGTTGGCAACATTCCCAGGTAAC
TTCCCTGGCGATAAGAATGCAGCTAGTGCCGTTGCAATCGCCCCATCAACTGATGCAAAC
ATCGGTAATGCTTTCTTGACAGAGTTGGTTTTAACTTTTATTTTAGTATACGTCATTTTC
GCTGTCGCTTTCGATACCGTTGATAATAGTGTAAAAACAAAGGTCGTAGGTAAATCCTCA
TCAAATAATCTCACAATCTATACTACCTCTGGTCAAACTAAAGCTGGTTTCGCACCAATT
GCAATCGGTTTCACTTTAGGTTTCCTTTGTTTCTTGGGTGGTTCAGTCTCTGGTGGTGCT
TTCAATCCTGCTAGAGTTTTCGGTACTGCTTTAGTTGGTAATAATTGGACTCGTCATTGG
ATGTATTGGATAGCTGACTTTTTAGGTGCTGGTTTAGCTGGTTTTGCTCAAAAATTCTTT
TCATCTACTCATAAATAAATTTC----------TTTGATTTATTCATTTGCAGATGTTAG
TGGTGCACATTTCAATCCAGCAGTGACCTTTGCAACATGTGTCACCAGAAAGACATCAAT
AACCAAAGGTTTGATGTATGTCGGTGCCCAATTGGTAGGTTCAGTATTGGCTTCGTTGAT
TTTGTTGGCAACATTCCCAGGTAACTTCCCTGGCGATAAGAATGCAGCTAGTGCCGTTGC
AATCGCCCCATCAACTGATGCAAACATCGGTAATGCTTTCTTGACAGAGTTGGTTTTAAC
TTTTATTTTAGTATACGTCATTTTCGCTGTCGCTTTCGATACCGTTGATAATAGTGTAAA
AACAAAGGTCGTAGGTAAATCCTCATCAAATAATCTCACAATCTATACTACCTCTGGTCA
AACTAAAGCTGGTTTCGCACCAATTGCAATCGGTTTCACTTTAGGTTTCCTTTGTTTCTT
GGGTGGTTCAGTCTCTGGTGGTGCTTTCAATCCTGCTAGAGTTTTCGGTACTGCTTTAGT
TGGTAATAATTGGACTCGTCATTGGATGTATTGGATAGCTGACTTTTTAGGTGCTGGTTT
AGCTGGTTTTGCTCAAAAATTCTTTTCATCTACTCATAAATAAATTTC
Length of connected seq. 1238
Full length Seq ID SLG243E
Full length Seq. 
>SLG243E.Seq
GCAGTGGCTTTGATTTATTCATTTGCAGATGTTAGTGGTGCACATTTCAATCCAGCAGTG
ACCTTTGCAACATGTGTCACCAGAAAGACATCAATAACCAAAGGTTTGATGNATGTCGGT
GCCCAATTGGTAGGTTCAGTATTGGCTTCGTTGATTTTGTTGGCAACATTCCCAGGTAAC
TTCCCTGGCGATAAGAATGCAGCTAGTGCCGTTGCAATCGCCCCATCAACTGATGCAAAC
ATCGGTAATGCTTTCTTGACAGAGTTGGTTTTAACTTTTATTTTAGTATACGTCATTTTC
GCTGTCGCTTTCGATACCGTTGATAATAGTGTAAAAACAAAGGTCGTAGGTAAATCCTCA
TCAAATAATCTCACAATCTATACTACCTCTGGTCAAACTAAAGCTGGTTTCGCACCAATT
GCAATCGGTTTCACTTTAGGTTTCCTTTGTTTCTTGGGTGGTTCAGTCTCTGGTGGTGCT
TTCAATCCTGCTAGAGTTTTCGGTACTGCTTTAGTTGGTAATAATTGGACTCGTCATTGG
ATGTATTGGATAGCTGACTTTTTAGGTGCTGGTTTAGCTGGTTTTGCTCAAAAATTCTTT
TCATCTACTCATAAATAAATTTC
Length of full length seq. 623