SLG214
Library SL
(Link to library)
Clone ID SLG214
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SLG214F
(Link to Original site)
Representative DNA sequence
>SLG214 (SLG214Q) /CSM/SL/SLG2-A/SLG214Q.Seq.d/
GTAATAGCGGTGGTGCTACTGGAGGTAATAGTGGAGGTGCTACTGGAGGAAATAGCGGTG
GTGCTACTGGAGGCAATAGCGGCGGTGCTTCATCATCTGGTGGCAATAGTGGAGGTGCTA
CAGGAGGTAATAGCGGTGGTGCTACTGGAGGCAATAGCGGTGGTGCTACTGGAGGTAATA
GCGGTGGTGCTACTGGAGGCAATAGTGGAGGTGCTACAGGTGGTAACAGTGGAGGTGCTA
CTGGAGGAAATAGCGGCGGTGCTTCATCATCTGGTGGCAATACTGGAGGTAATAGCGGCG
GTGCTACTGGAGGTAATAGCGGCGGTGCTACTGGAGGCAATAGTGGAGGTGCTACAGGTG
GTAACAGTGGAGGTGCTACTGGAGGAAATAGTGGAGGTAACAGTGGTGCCTCATCTTCAG
GAGGTAATAGCGGTTGGTTAACAGGTGGTGCTACTGGTGGTAATAGTGGAGGTGCTACTG
GAGGAAATAGTGGCGCTGCAACCGGAGGAAATAGTGGTGCTACTGGTGGTAATAXXXXXX
XXXX
sequence update 1999. 1.28
Translated Amino Acid sequence
NSGGATGGNSGGATGGNSGGATGGNSGGASSSGGNSGGATGGNSGGATGGNSGGATGGNS
GGATGGNSGGATGGNSGGATGGNSGGASSSGGNTGGNSGGATGGNSGGATGGNSGGATGG
NSGGATGGNSGGNSGASSSGGNSGWLTGGATGGNSGGATGGNSGAATGGNSGATGGN---


Translated Amino Acid sequence (All Frames)
Frame A:
viavvllevivevlleeiavvlleaiaavlhhlvaivevlqeviavvlleaiavvllevi
avvlleaivevlqvvtvevlleeiaavlhhlvaileviaavlleviaavlleaivevlqv
vtvevlleeivevtvvphlqeviavg*qvvllvvivevlleeivalqpeeivvllvv---


Frame B:
**rwcywr**wrcywrk*rwcywrq*rrcfiiwwq*wrcyrr**rwcywrq*rwcywr**
rwcywrq*wrcyrw*qwrcywrk*rrcfiiwwqywr**rrcywr**rrcywrq*wrcyrw
*qwrcywrk*wr*qwclifrr**rlvnrwcyww**wrcywrk*wrcnrrk*wcyww*---


Frame C:
NSGGATGGNSGGATGGNSGGATGGNSGGASSSGGNSGGATGGNSGGATGGNSGGATGGNS
GGATGGNSGGATGGNSGGATGGNSGGASSSGGNTGGNSGGATGGNSGGATGGNSGGATGG
NSGGATGGNSGGNSGASSSGGNSGWLTGGATGGNSGGATGGNSGAATGGNSGATGGN---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLG214 (SLG214Q) /CSM/SL/SLG2-A/SLG214Q.Seq.d/ 1059 0.0
SLA520 (SLA520Q) /CSM/SL/SLA5-A/SLA520Q.Seq.d/ 797 0.0
SLE356 (SLE356Q) /CSM/SL/SLE3-C/SLE356Q.Seq.d/ 696 0.0
SLG686 (SLG686Q) /CSM/SL/SLG6-D/SLG686Q.Seq.d/ 611 e-174
SLK338 (SLK338Q) /CSM/SL/SLK3-B/SLK338Q.Seq.d/ 446 e-124
SLJ818 (SLJ818Q) /CSM/SL/SLJ8-A/SLJ818Q.Seq.d/ 438 e-122
CHJ680 (CHJ680Q) /CSM/CH/CHJ6-D/CHJ680Q.Seq.d/ 398 e-110
SLK195 (SLK195Q) /CSM/SL/SLK1-D/SLK195Q.Seq.d/ 299 2e-80
SLK148 (SLK148Q) /CSM/SL/SLK1-B/SLK148Q.Seq.d/ 270 2e-71
SLJ545 (SLJ545Q) /CSM/SL/SLJ5-B/SLJ545Q.Seq.d/ 258 8e-68

own update 2002.12.11
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU061816) Dictyostelium discoideum slug cDNA, clone SLG214. 1059 0.0 1
(AU060177) Dictyostelium discoideum slug cDNA, clone SLA520. 797 0.0 1
(AU061466) Dictyostelium discoideum slug cDNA, clone SLE356. 696 0.0 1
(AU061937) Dictyostelium discoideum slug cDNA, clone SLG686. 611 e-170 1
(AU060540) Dictyostelium discoideum slug cDNA, clone SLK338. 446 e-121 1
(AU060466) Dictyostelium discoideum slug cDNA, clone SLJ818. 438 e-118 1
(BJ381572) Dictyostelium discoideum cDNA clone:ddc41o20, 3' ... 232 e-105 3
(AU060507) Dictyostelium discoideum slug cDNA, clone SLK195. 299 6e-77 1
(AU060774) Dictyostelium discoideum slug cDNA, clone SLB441. 170 8e-70 6
(AU060495) Dictyostelium discoideum slug cDNA, clone SLK148. 270 5e-68 1
dna update 2009. 5.18
Homology vs Protein

***** No hits found ******

Lambda K H
0.316 0.135 0.487

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 52,497,189
protein update 2009. 6. 4
PSORT

psg: 0.75 gvh: 0.38 alm: 0.63 top: 0.53 tms: 0.00 mit: -0.71 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: nuclear
32.0 %: cytoplasmic
8.0 %: mitochondrial
8.0 %: vacuolar
8.0 %: vesicles of secretory system
4.0 %: Golgi

>> prediction for SLG214 is nuc

5' end seq. ID SLG214F
5' end seq.
>SLG214F.Seq
GTAATAGCGGTGGTGCTACTGGAGGTAATAGTGGAGGTGCTACTGGAGGAAATAGCGGTG
GTGCTACTGGAGGCAATAGCGGCGGTGCTTCATCATCTGGTGGCAATAGTGGAGGTGCTA
CAGGAGGTAATAGCGGTGGTGCTACTGGAGGCAATAGCGGTGGTGCTACTGGAGGTAATA
GCGGTGGTGCTACTGGAGGCAATAGTGGAGGTGCTACAGGTGGTAACAGTGGAGGTGCTA
CTGGAGGAAATAGCGGCGGTGCTTCATCATCTGGTGGCAATACTGGAGGTAATAGCGGCG
GTGCTACTGGAGGTAATAGCGGCGGTGCTACTGGAGGCAATAGTGGAGGTGCTACAGGTG
GTAACAGTGGAGGTGCTACTGGAGGAAATAGTGGAGGTAACAGTGGTGCCTCATCTTCAG
GAGGTAATAGCGGTTGGTTAACAGGTGGTGCTACTGGTGGTAATAGTGGAGGTGCTACTG
GAGGAAATAGTGGCGCTGCAACCGGAGGAAATAGTGGTGCTACTGGTGGTAATA------
----
Length of 5' end seq. 534
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -