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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLG213
Library SL
(Link to library)
Clone ID SLG213
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16382-1
Original site URL
Representative seq. ID SLG213Z
(Link to Original site)
Representative DNA sequence 
>SLG213 (SLG213Q) /CSM/SL/SLG2-A/SLG213Q.Seq.d/
XXXXXXXXXXTAGCCTACGTCGCCCTCGACTTTGAAGCTGAAATGCAAACTGCTGCCTCA
TCATCAGCCCTCGTTAATTCATACGAATTTCCAGACGGTCAAGTCATCACCATCGGTAAT
GAACGTTTCCGTTGCCCAGAAGCCCTCTTCCAACCATCATTCTTAGGTATGGAATCAGCT
GGTATCCACGAAACCACCTATAACTCCATCATGAAATGTGATGTTGATATCCGTAAAGAT
TTATACGGTAATGTCGTCTTATCTGGTGGTACAACTATGTTCCCAGGTATTGCTGATCGT
ATGAACAAAGAATTAACTGCTTTAGCCCCATCAACCATGAAAATTTAAATCATTGCTCCA
CCAGAACGTAAATACTCTGTCTGGATTGGTGGATCTATCTTAGCTTCACTCTCAACTTTC
CAACAAATGTGGATCTCCAAAGAAGAATATGACGAATCAGGTCCATCAATTGTCCACAGA
AAATGTTTCTAAACAATTAAAACTAGTGATGAAAGTGCTTCTCACACATACAAATATATT
TAAATGTATAATAATAATAAAATATAATTATTTTTAATGGTTGTTGATCTTTATCCGACT
ATCAAAAAAAAAAAAAA
sequence update 1998. 6.11
Translated Amino Acid sequence 
---AYVALDFEAEMQTAASSSALVNSYEFPDGQVITIGNERFRCPEALFQPSFLGMESAG
IHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKI*iiapp
erkysvwiggsilaslstfqqmwiskeeydesgpsivhrkcf*tiktsdesashtykyi*
mynnnki*lflmvvdlyptikkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---slrrprl*s*nanccliispr*firisrrsshhhr**tfplprsplptiilrygisw
yprnhl*lhhem*c*yp*rfir*crliwwynyvpryc*syeqrincfspinhenlnhcst
rt*ilcldwwiylsftlnfptnvdlqrri*rirsincpqkmflnn*n***kcfshiqiyl
nv****niiifngc*slsdyqkkkk


Frame B:
---AYVALDFEAEMQTAASSSALVNSYEFPDGQVITIGNERFRCPEALFQPSFLGMESAG
IHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKI*iiapp
erkysvwiggsilaslstfqqmwiskeeydesgpsivhrkcf*tiktsdesashtykyi*
mynnnki*lflmvvdlyptikkkk


Frame C:
---ptspstlklkckllphhqpslihtnfqtvksspsvmnvsvaqkpssnhhs*vwnqlv
stkppitps*nvmlisvkiytvmssylvvqlcsqvlliv*tkn*ll*phqp*kfksllhq
nvntlsglvdls*lhsqlsnkcgspkknmtnqvhqlstenvskqlklvmkvllthtnifk
ciiiikynyf*wllifirlskkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLG213 (SLG213Q) /CSM/SL/SLG2-A/SLG213Q.Seq.d/                       1025   0.0
SLA737 (SLA737Q) /CSM/SL/SLA7-B/SLA737Q.Seq.d/                        993   0.0
SLA469 (SLA469Q) /CSM/SL/SLA4-C/SLA469Q.Seq.d/                        993   0.0
VFO858 (VFO858Q) /CSM/VF/VFO8-C/VFO858Q.Seq.d/                        985   0.0
VFM863 (VFM863Q) /CSM/VF/VFM8-C/VFM863Q.Seq.d/                        985   0.0
VFM705 (VFM705Q) /CSM/VF/VFM7-A/VFM705Q.Seq.d/                        985   0.0
VFL589 (VFL589Q) /CSM/VF/VFL5-D/VFL589Q.Seq.d/                        985   0.0
VFK573 (VFK573Q) /CSM/VF/VFK5-D/VFK573Q.Seq.d/                        985   0.0
VFJ832 (VFJ832Q) /CSM/VF/VFJ8-B/VFJ832Q.Seq.d/                        985   0.0
VFJ616 (VFJ616Q) /CSM/VF/VFJ6-A/VFJ616Q.Seq.d/                        985   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU039700) Dictyostelium discoideum slug cDNA, clone SLG213.     1033   0.0    2
(AU033410) Dictyostelium discoideum slug cDNA, clone SLA737.      999   0.0    2
(AU052265) Dictyostelium discoideum slug cDNA, clone SLA469.      995   0.0    2
(AU034887) Dictyostelium discoideum slug cDNA, clone SLE643.      991   0.0    2
(AU034881) Dictyostelium discoideum slug cDNA, clone SLE636.      991   0.0    2
(AU034950) Dictyostelium discoideum slug cDNA, clone SLE387.      989   0.0    2
(AU034159) Dictyostelium discoideum slug cDNA, clone SLC116.      987   0.0    2
(AU035023) Dictyostelium discoideum slug cDNA, clone SLE509.      987   0.0    2
(AU039294) Dictyostelium discoideum slug cDNA, clone SLH364.      987   0.0    2
(AU284462) Dictyostelium discoideum gamete cDNA clone:FC-AX1...   987   0.0    2
dna update 2009. 5.18
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54H30) RecName: Full=Major actin; AltName: Full=Actin-1; AltNa...   311   9e-84
X03282_1(X03282|pid:none) dictyostelium discoideum gene for acti...   311   9e-84
B23412(B23412)actin 12 - slime mold (Dictyostelium discoideum)        311   9e-84
ATDO(A93223;A92871;S67999;A03004)actin - slime mold (Dictyosteli...   307   2e-82
(P02576) RecName: Full=Actin, plasmodial isoform;  &ATFY(A29044;...   307   2e-82
(Q553U6) RecName: Full=Putative actin-22;  &AC116305_3(AC116305|...   307   2e-82
(P07829) RecName: Full=Actin-3; AltName: Full=Actin-3-sub 1;          304   1e-81
AF508263_1(AF508263|pid:none) Pyrocystis lunula actin mRNA, comp...   304   1e-81
AY615868_1(AY615868|pid:none) Amastigomonas marina actin gene, p...   303   3e-81
AY294154_1(AY294154|pid:none) Thecamoeba similis actin mRNA, com...   301   7e-81
protein update 2009. 6. 4
PSORT 

 psg: 0.75  gvh: 0.41  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.15  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 36.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SLG213 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLG213Z
3' end seq. 
>SLG213Z.Seq
----------TAGCCTACGTCGCCCTCGACTTTGAAGCTGAAATGCAAACTGCTGCCTCA
TCATCAGCCCTCGTTAATTCATACGAATTTCCAGACGGTCAAGTCATCACCATCGGTAAT
GAACGTTTCCGTTGCCCAGAAGCCCTCTTCCAACCATCATTCTTAGGTATGGAATCAGCT
GGTATCCACGAAACCACCTATAACTCCATCATGAAATGTGATGTTGATATCCGTAAAGAT
TTATACGGTAATGTCGTCTTATCTGGTGGTACAACTATGTTCCCAGGTATTGCTGATCGT
ATGAACAAAGAATTAACTGCTTTAGCCCCATCAACCATGAAAATTTAAATCATTGCTCCA
CCAGAACGTAAATACTCTGTCTGGATTGGTGGATCTATCTTAGCTTCACTCTCAACTTTC
CAACAAATGTGGATCTCCAAAGAAGAATATGACGAATCAGGTCCATCAATTGTCCACAGA
AAATGTTTCTAAACAATTAAAACTAGTGATGAAAGTGCTTCTCACACATACAAATATATT
TAAATGTATAATAATAATAAAATATAATTATTTTTAATGGTTGTTGATCTTTATCCGACT
ATCAAAAAAAAAAAAAA
Length of 3' end seq. 607
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -