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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLG207
Library SL
(Link to library)
Clone ID SLG207
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16540-1
Original site URL
Representative seq. ID SLG207E
(Link to Original site)
Representative DNA sequence 
>SLG207 (SLG207Q) /CSM/SL/SLG2-A/SLG207Q.Seq.d/
GTAAAACTTGTCATGATGTTAATTGTGGTTCATTGGATTGCGCAATGGTTCCTAATAAAT
GTCCAAGAGGTTCTCGTGACTGCTGTATTCAAATTCCATCGTGTCGTTTACCATCAAATT
CTAATGATGATTATGATAATGATCCTAATGGATATGATGATAATGAAAATGAGGGTGATG
GATTATCAATTCCATGTGGCCCAATTATCACTTGTAAATTAAATGAAATTTGTTTATTAG
AACAATCACGTTGTGCCCCATTATGTGAATTTGTAAAATGTTCACCAGGAACTAAATGTG
TTGCTGATACAACTGGAATTCCAGTTTGTTTACCAAATGGAATAACTCCATATTAAATTT
AAATAAAAAAAAAATATATATTTTCATTTTTCAAA
sequence update 1998. 6.11
Translated Amino Acid sequence 
KTCHDVNCGSLDCAMVPNKCPRGSRDCCIQIPSCRLPSNSNDDYDNDPNGYDDNENEGDG
LSIPCGPIITCKLNEICLLEQSRCAPLCEFVKCSPGTKCVADTTGIPVCLPNGITPY*i*
ikkkyifsffk
Translated Amino Acid sequence (All Frames) 
Frame A:
vklvmmlivvhwiaqwflinvqevlvtavfkfhrvvyhqilmmimimilmdmmimkmrvm
dyqfhvaqlslvn*mkfvy*nnhvvphyvnl*nvhqelnvlliqlefqfvyqme*lhikf
k*kkniyfhfs


Frame B:
*nls*c*lwfiglrngs**mskrfs*llysnsivsftikf***l***s*wi****k*g*w
iinsmwpnyhl*ik*nlfirtitlcpim*ickmftrn*mcc*ynwnsslftkwnnsilnl
nkkkiyififq


Frame C:
KTCHDVNCGSLDCAMVPNKCPRGSRDCCIQIPSCRLPSNSNDDYDNDPNGYDDNENEGDG
LSIPCGPIITCKLNEICLLEQSRCAPLCEFVKCSPGTKCVADTTGIPVCLPNGITPY*i*
ikkkyifsffk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLI220 (SLI220Q) /CSM/SL/SLI2-A/SLI220Q.Seq.d/                        724   0.0
SLG207 (SLG207Q) /CSM/SL/SLG2-A/SLG207Q.Seq.d/                        724   0.0
SLE226 (SLE226Q) /CSM/SL/SLE2-B/SLE226Q.Seq.d/                        724   0.0
SLD229 (SLD229Q) /CSM/SL/SLD2-B/SLD229Q.Seq.d/                        724   0.0
SLB680 (SLB680Q) /CSM/SL/SLB6-D/SLB680Q.Seq.d/                        724   0.0
SLI350 (SLI350Q) /CSM/SL/SLI3-C/SLI350Q.Seq.d/                        722   0.0
SLH875 (SLH875Q) /CSM/SL/SLH8-D/SLH875Q.Seq.d/                        722   0.0
SLF408 (SLF408Q) /CSM/SL/SLF4-A/SLF408Q.Seq.d/                        722   0.0
SLE835 (SLE835Q) /CSM/SL/SLE8-B/SLE835Q.Seq.d/                        722   0.0
SLD330 (SLD330Q) /CSM/SL/SLD3-B/SLD330Q.Seq.d/                        722   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU039696) Dictyostelium discoideum slug cDNA, clone SLG207.      359   e-165  3
(AU052383) Dictyostelium discoideum slug cDNA, clone SLD229.      359   e-165  3
(AU053303) Dictyostelium discoideum slug cDNA, clone SLI350.      359   e-165  3
(AU053244) Dictyostelium discoideum slug cDNA, clone SLI220.      359   e-165  3
(AU033975) Dictyostelium discoideum slug cDNA, clone SLB680.      359   e-165  3
(AU034714) Dictyostelium discoideum slug cDNA, clone SLE226.      359   e-165  3
(AU039609) Dictyostelium discoideum slug cDNA, clone SLE835.      359   e-164  3
(AU052969) Dictyostelium discoideum slug cDNA, clone SLF408.      359   e-163  3
(AU033834) Dictyostelium discoideum slug cDNA, clone SLB496.      359   e-162  3
(AU039509) Dictyostelium discoideum slug cDNA, clone SLA763.      359   e-162  3
dna update 2009. 5.18
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;...   201   7e-51
(P14328) RecName: Full=Spore coat protein SP96;  &AC117075_49(AC...    37   0.21
AL662947_2(AL662947|pid:none) Oryza sativa genomic DNA, chromoso...    35   0.82
CR855176_2(CR855176|pid:none) Oryza sativa (indica cultivar-grou...    35   0.82
S07638(S07638;A60942;B60942) spore coat protein SP96 precursor -...    34   1.4
CP000112_2757(CP000112|pid:none) Desulfovibrio desulfuricans G20...    33   4.0
CP000251_2584(CP000251|pid:none) Anaeromyxobacter dehalogenans 2...    32   6.9
T22274(T22274)hypothetical protein F46B3.9 - Caenorhabditis eleg...    32   6.9
protein update 2009. 3. 4
PSORT 

 psg: 0.72  gvh: 0.31  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 40.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: plasma membrane

>> prediction for SLG207 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SLG207E
Full length Seq. 
>SLG207E.Seq
GTAAAACTTGTCATGATGTTAATTGTGGTTCATTGGATTGCGCAATGGTTCCTAATAAAT
GTCCAAGAGGTTCTCGTGACTGCTGTATTCAAATTCCATCGTGTCGTTTACCATCAAATT
CTAATGATGATTATGATAATGATCCTAATGGATATGATGATAATGAAAATGAGGGTGATG
GATTATCAATTCCATGTGGCCCAATTATCACTTGTAAATTAAATGAAATTTGTTTATTAG
AACAATCACGTTGTGCCCCATTATGTGAATTTGTAAAATGTTCACCAGGAACTAAATGTG
TTGCTGATACAACTGGAATTCCAGTTTGTTTACCAAATGGAATAACTCCATATTAAATTT
AAATAAAAAAAAAATATATATTTTCATTTTTCAAA
Length of full length seq. 395