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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLG190
Library SL
(Link to library)
Clone ID SLG190
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12140-1
Original site URL
Representative seq. ID SLG190E
(Link to Original site)
Representative DNA sequence 
>SLG190 (SLG190Q) /CSM/SL/SLG1-D/SLG190Q.Seq.d/
ATTTAACCCAATGTATAACAATAACGCAATGGCTCCAAGTTACCCAAACTATAACGCAAT
TGGAGCTGATAATCAACACAATACTAACCCATATGGTATGATGAATCATCAACAACAACA
ACAACAACAACAACAACAACAACCAATGATGAATCAAATGAATAATTTTTCAGCACCAAC
ATACTCTCAATTTACAAACTACGCCCAACCAAACCAACAACCATACAATAATAACTATGG
AGGAATGAACCAATCAAATATGTATCCAAATAATAATATGAGTGGTAAATCATCTCTTAT
TTAAACACATTCAAAGAATAAAAATAT
sequence update 1998. 6.10
Translated Amino Acid sequence 
FNPMYNNNAMAPSYPNYNAIGADNQHNTNPYGMMNHQQQQQQQQQQQPMMNQMNNFSAPT
YSQFTNYAQPNQQPYNNNYGGMNQSNMYPNNNMSGKSSLI*thsknkn
Translated Amino Acid sequence (All Frames) 
Frame A:
i*pnv*q*rngsklpkl*rnws**stqy*piwydesstttttttttttndesne*ffstn
ilsiyklrptkpttiq**lwrnepikyvsk**yew*iisylntfke*ky


Frame B:
FNPMYNNNAMAPSYPNYNAIGADNQHNTNPYGMMNHQQQQQQQQQQQPMMNQMNNFSAPT
YSQFTNYAQPNQQPYNNNYGGMNQSNMYPNNNMSGKSSLI*thsknkn


Frame C:
ltqcititqwlqvtqtitqleliintilthmv**iinnnnnnnnnnnq**ik*iifqhqh
tlnlqttpnqtnnhtiitmee*tnqiciqiii*vvnhllfkhiqriki
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLG224 (SLG224Q) /CSM/SL/SLG2-A/SLG224Q.Seq.d/                        365   e-100
SLG190 (SLG190Q) /CSM/SL/SLG1-D/SLG190Q.Seq.d/                        365   e-100
SLC736 (SLC736Q) /CSM/SL/SLC7-B/SLC736Q.Seq.d/                        365   e-100
CFF380 (CFF380Q) /CSM/CF/CFF3-D/CFF380Q.Seq.d/                        365   e-100
SFD379 (SFD379Q) /CSM/SF/SFD3-D/SFD379Q.Seq.d/                        317   6e-86
SFI145 (SFI145Q) /CSM/SF/SFI1-B/SFI145Q.Seq.d/                        297   5e-80
CHK229 (CHK229Q) /CSM/CH/CHK2-B/CHK229Q.Seq.d/                        216   2e-55
AFI686 (AFI686Q) /CSM/AF/AFI6-D/AFI686Q.Seq.d/                         40   0.020
CFF441 (CFF441Q) /CSM/CF/CFF4-B/CFF441Q.Seq.d/                         36   0.31
AFM860 (AFM860Q) /CSM/AF/AFM8-C/AFM860Q.Seq.d/                         36   0.31
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ372282) Dictyostelium discoideum cDNA clone:ddc11p19, 3' ...   365   e-155  2
(AU039706) Dictyostelium discoideum slug cDNA, clone SLG224.      365   e-155  2
(AU039690) Dictyostelium discoideum slug cDNA, clone SLG190.      365   e-155  2
(AU034354) Dictyostelium discoideum slug cDNA, clone SLC736.      365   e-153  2
(BJ381692) Dictyostelium discoideum cDNA clone:ddc42i08, 3' ...   216   e-102  2
(BJ399895) Dictyostelium discoideum cDNA clone:dds7n19, 3' e...   317   2e-98  2
(BJ402569) Dictyostelium discoideum cDNA clone:dds17i11, 3' ...   268   3e-76  3
(EX621486) 255416082 Pea aphid whole body normalized full le...    46   0.81   1
(AC012059) Homo sapiens clone RP11-19A2, WORKING DRAFT SEQUE...    34   1.6    2
(AC010387) Homo sapiens chromosome 5 clone CTD-2074D8, compl...    34   1.6    2
dna update 2009. 5.18
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54GH3) RecName: Full=Target of Myb protein 1; AltName: Full=Dd...   112   4e-24
protein update 2009. 7. 5
PSORT 

 psg: 0.77  gvh: 0.20  alm: 0.70  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 28.0 %: cytoplasmic
	 20.0 %: mitochondrial
	 12.0 %: cytoskeletal

>> prediction for SLG190 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SLG190E
Full length Seq. 
>SLG190E.Seq
ATTTAACCCAATGTATAACAATAACGCAATGGCTCCAAGTTACCCAAACTATAACGCAAT
TGGAGCTGATAATCAACACAATACTAACCCATATGGTATGATGAATCATCAACAACAACA
ACAACAACAACAACAACAACAACCAATGATGAATCAAATGAATAATTTTTCAGCACCAAC
ATACTCTCAATTTACAAACTACGCCCAACCAAACCAACAACCATACAATAATAACTATGG
AGGAATGAACCAATCAAATATGTATCCAAATAATAATATGAGTGGTAAATCATCTCTTAT
TTAAACACATTCAAAGAATAAAAATAT
Length of full length seq. 327