SLG167
Library SL
(Link to library)
Clone ID SLG167
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16455-1
Original site URL
Representative seq. ID SLG167E
(Link to Original site)
Representative DNA sequence
>SLG167 (SLG167Q) /CSM/SL/SLG1-C/SLG167Q.Seq.d/
GTTTCGCCGTCAGAGATATGAGACAAACGACCTAATGGTGGGTATTCAGTGAATGATTCA
ACACACATTGGACGAGATGGGGTTAATTCGACCATAGCAGCATCACCATTCGGTCGTTTC
GCCGTCAGAGATATGAGACAAACCGTTGCCGTCGGTGTCATCAAATCAACCGTCAAGAAA
GCCCCAGGTAAAGCAGGTGATAAGAAAGGTGCTGCTGCTCCATCAAAGAAGAAATAAATA
ATTTGAAAAAAAATTTTATAATTATTCTAAAAATAAAAAAAAAAATAATAAAAAAGAGCT
TTTTAAAAATA
sequence update 1998. 6.10
Translated Amino Acid sequence
vspsei*DKRPNGGYSVNDSTHIGRDGVNSTIAASPFGRFAVRDMRQTVAVGVIKSTVKK
APGKAGDKKGAAAPSKKK*ii*kkil*lf*k*kkk**kraf*k


Translated Amino Acid sequence (All Frames)
Frame A:
vspsei*DKRPNGGYSVNDSTHIGRDGVNSTIAASPFGRFAVRDMRQTVAVGVIKSTVKK
APGKAGDKKGAAAPSKKK*ii*kkil*lf*k*kkk**kraf*k


Frame B:
frrqryetndlmvgiq*miqhtldemglirp*qhhhsvvspsei*dkplpsvssnqpsrk
pqvkqvirkvlllhqrrnk*fekkfynysknkkknnkkelfkn


Frame C:
favrdmrqtt*wwvfse*fnthwtrwg*fdhssitirsfrrqryetnrcrrchqinrqes
pr*sr**ercccsikeeinnlkknfiiilkikkkiikksflki


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLG167 (SLG167Q) /CSM/SL/SLG1-C/SLG167Q.Seq.d/ 486 e-136
VSA495 (VSA495Q) /CSM/VS/VSA4-D/VSA495Q.Seq.d/ 274 7e-73
SLC814 (SLC814Q) /CSM/SL/SLC8-A/SLC814Q.Seq.d/ 274 7e-73
SLB720 (SLB720Q) /CSM/SL/SLB7-A/SLB720Q.Seq.d/ 274 7e-73
SLA706 (SLA706Q) /CSM/SL/SLA7-A/SLA706Q.Seq.d/ 274 7e-73
SLA634 (SLA634Q) /CSM/SL/SLA6-B/SLA634Q.Seq.d/ 274 7e-73
SLA633 (SLA633Q) /CSM/SL/SLA6-B/SLA633Q.Seq.d/ 274 7e-73
SFG782 (SFG782Q) /CSM/SF/SFG7-D/SFG782Q.Seq.d/ 274 7e-73
FC-IC1526 (FC-IC1526Q) /CSM/FC-IC/FC-IC1526Q.Seq.d/ 274 7e-73
FC-IC0437 (FC-IC0437Q) /CSM/FC-IC/FC-IC0437Q.Seq.d/ 274 7e-73

own update 2003. 6.11
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU039677) Dictyostelium discoideum slug cDNA, clone SLG167. 458 e-125 1
(X55972) D. discoideum EF1-II gene for elongation factor 1 a... 246 4e-61 1
(AU284939) Dictyostelium discoideum gamete cDNA clone:FC-BQ1... 246 4e-61 1
(AU284921) Dictyostelium discoideum gamete cDNA clone:FC-BP2... 246 4e-61 1
(AU284887) Dictyostelium discoideum gamete cDNA clone:FC-BO1... 246 4e-61 1
(AU284668) Dictyostelium discoideum gamete cDNA clone:FC-BG1... 246 4e-61 1
(AU284515) Dictyostelium discoideum gamete cDNA clone:FC-BB0... 246 4e-61 1
(AU284480) Dictyostelium discoideum gamete cDNA clone:FC-AY2... 246 4e-61 1
(AU284419) Dictyostelium discoideum gamete cDNA clone:FC-AT2... 246 4e-61 1
(AU284299) Dictyostelium discoideum gamete cDNA clone:FC-AJ0... 246 4e-61 1
dna update 2009. 5.18
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

X55973_1(X55973|pid:none) D. discoideum EF1-I gene for elongatio... 63 3e-09
X55972_1(X55972|pid:none) D. discoideum EF1-II gene for elongati... 63 3e-09
(P18624) RecName: Full=Elongation factor 1-alpha; Short... 63 3e-09
AB077104_1(AB077104|pid:none) Smittium culisetae EF-1 alpha gene... 56 3e-07
FJ539138_1(FJ539138|pid:none) Ignatius tetrasporus strain UTEX B... 55 6e-07
AY643816_1(AY643816|pid:none) Lycogala epidendrum elongation fac... 55 8e-07
AB070233_1(AB070233|pid:none) Branchiostoma floridae EF-1a gene ... 55 8e-07
DQ522357_1(DQ522357|pid:none) Simplicillium lanosoniveum strain ... 55 8e-07
AB077103_1(AB077103|pid:none) Piptocephalis freseniana EF-1 alph... 55 8e-07
AB070232_1(AB070232|pid:none) Asterias amurensis EF-1a gene for ... 54 1e-06
protein update 2009. 7. 5
PSORT

psg: 0.70 gvh: 0.26 alm: 0.53 top: 0.53 tms: 0.00 mit: 0.14 mip: 0.00
nuc: 0.12 erl: 0.00 erm: 0.60 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: nuclear
36.0 %: cytoplasmic
4.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for SLG167 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SLG167E
Full length Seq.
>SLG167E.Seq
GTTTCGCCGTCAGAGATATGAGACAAACGACCTAATGGTGGGTATTCAGTGAATGATTCA
ACACACATTGGACGAGATGGGGTTAATTCGACCATAGCAGCATCACCATTCGGTCGTTTC
GCCGTCAGAGATATGAGACAAACCGTTGCCGTCGGTGTCATCAAATCAACCGTCAAGAAA
GCCCCAGGTAAAGCAGGTGATAAGAAAGGTGCTGCTGCTCCATCAAAGAAGAAATAAATA
ATTTGAAAAAAAATTTTATAATTATTCTAAAAATAAAAAAAAAAATAATAAAAAAGAGCT
TTTTAAAAATA
Length of full length seq. 311