SLG159
Library SL
(Link to library)
Clone ID SLG159
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15932-1
Original site URL
Representative seq. ID SLG159Z
(Link to Original site)
Representative DNA sequence
>SLG159 (SLG159Q) /CSM/SL/SLG1-C/SLG159Q.Seq.d/
XXXXXXXXXXAATTACCACCATTACCAGTAGTTGAACAAGGAGGAATTATTGAAAATGTT
CAACCACAAGTTGAAGAATTACCAAAACTTGAAGNATTATCAGTAAATGGTGAACAAGAA
GATGTTAGACGTAAATGTATTGGTACATTGGTTTCAATGGGTTTCAGTAATACTCCNAAT
ATTATTGAAATTATCTAAAGATATAATTTCAATATCAATGAAATCATTGACCATTTATTA
AGTAATCAAGAACAATAAAAAAGATCTTAGAAAATCTTTTTCTTTTTTTTTTTGTTTAGT
TTCCTTTTTTTTTAAATTAATAAATAAAATTTTATATTATAAAATCAAA
sequence update 1998. 6.10
Translated Amino Acid sequence
---LPPLPVVEQGGIIENVQPQVEELPKLEXLSVNGEQEDVRRKCIGTLVSMGFSNTPNI
IEII*rynfnineiidhllsnqeq*krs*kiffffflfsflff*ink*nfil*nq


Translated Amino Acid sequence (All Frames)
Frame A:
---ittitss*trrny*kcstts*ritkt*xiiskw*trrc*t*mywyigfngfq*ysxy
y*nylki*fqyq*nh*pfik*srtikkilenlflfffv*fpffln**ikfyiiks


Frame B:
---LPPLPVVEQGGIIENVQPQVEELPKLEXLSVNGEQEDVRRKCIGTLVSMGFSNTPNI
IEII*rynfnineiidhllsnqeq*krs*kiffffflfsflff*ink*nfil*nq


Frame C:
---yhhyq*lnkeellkmfnhklknyqnlkxyq*mvnkkmldvnvlvhwfqwvsvilxil
lklskdiisismksltiy*viknnkkdlrksfsfffclvsfffklinkilyykik


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLG159 (SLG159Q) /CSM/SL/SLG1-C/SLG159Q.Seq.d/ 515 e-145
VSC652 (VSC652Q) /CSM/VS/VSC6-C/VSC652Q.Seq.d/ 476 e-133
SSM813 (SSM813Q) /CSM/SS/SSM8-A/SSM813Q.Seq.d/ 476 e-133
SSM404 (SSM404Q) /CSM/SS/SSM4-A/SSM404Q.Seq.d/ 476 e-133
SSM351 (SSM351Q) /CSM/SS/SSM3-C/SSM351Q.Seq.d/ 476 e-133
SSM280 (SSM280Q) /CSM/SS/SSM2-D/SSM280Q.Seq.d/ 476 e-133
SSK110 (SSK110Q) /CSM/SS/SSK1-A/SSK110Q.Seq.d/ 476 e-133
SSI103 (SSI103Q) /CSM/SS/SSI1-A/SSI103Q.Seq.d/ 476 e-133
SSH618 (SSH618Q) /CSM/SS/SSH6-A/SSH618Q.Seq.d/ 476 e-133
SSH104 (SSH104Q) /CSM/SS/SSH1-A/SSH104Q.Seq.d/ 476 e-133

own update 2001. 8.27
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU039673) Dictyostelium discoideum slug cDNA, clone SLG159. 515 e-157 2
(AU052248) Dictyostelium discoideum slug cDNA, clone SLA424. 476 e-145 2
(C92456) Dictyostelium discoideum slug cDNA, clone SSE569. 476 e-145 2
(AU039018) Dictyostelium discoideum slug cDNA, clone SSM280. 476 e-145 2
(AU039112) Dictyostelium discoideum slug cDNA, clone SSM404. 476 e-145 2
(AU039077) Dictyostelium discoideum slug cDNA, clone SSM351. 476 e-145 2
(AU037964) Dictyostelium discoideum slug cDNA, clone SSH104. 476 e-145 2
(C91350) Dictyostelium discoideum slug cDNA, clone SSK110. 476 e-145 2
(C93412) Dictyostelium discoideum slug cDNA, clone SSM813. 476 e-145 2
(C90110) Dictyostelium discoideum slug cDNA, clone SSI103. 476 e-145 2
dna update 2009. 5.18
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(A8FKB4) RecName: Full=Exodeoxyribonuclease 7 large subunit; ... 30 0.31
(Q5HWE6) RecName: Full=Exodeoxyribonuclease 7 large subunit; ... 28 1.4
(A1VY44) RecName: Full=Exodeoxyribonuclease 7 large subunit; ... 28 1.4
(Q9PIH4) RecName: Full=Exodeoxyribonuclease 7 large subunit; ... 28 1.4
BT078993_1(BT078993|pid:none) Esox lucius clone eluc-evq-530-114... 32 6.7

protein update 2009. 6. 4
PSORT

psg: 0.75 gvh: 0.41 alm: 0.45 top: 0.53 tms: 0.00 mit: 0.14 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
28.0 %: nuclear
8.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: mitochondrial
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for SLG159 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLG159Z
3' end seq.
>SLG159Z.Seq
----------AATTACCACCATTACCAGTAGTTGAACAAGGAGGAATTATTGAAAATGTT
CAACCACAAGTTGAAGAATTACCAAAACTTGAAGNATTATCAGTAAATGGTGAACAAGAA
GATGTTAGACGTAAATGTATTGGTACATTGGTTTCAATGGGTTTCAGTAATACTCCNAAT
ATTATTGAAATTATCTAAAGATATAATTTCAATATCAATGAAATCATTGACCATTTATTA
AGTAATCAAGAACAATAAAAAAGATCTTAGAAAATCTTTTTCTTTTTTTTTTTGTTTAGT
TTCCTTTTTTTTTAAATTAATAAATAAAATTTTATATTATAAAATCAAA
Length of 3' end seq. 339
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -