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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLG150
Library SL
(Link to library)
Clone ID SLG150
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16397-1
Original site URL
Representative seq. ID SLG150Z
(Link to Original site)
Representative DNA sequence 
>SLG150 (SLG150Q) /CSM/SL/SLG1-C/SLG150Q.Seq.d/
XXXXXXXXXXACGTCTGGTGTGTATTATGAGCCAAAATGTTCTCCAACTGAATTGGATCA
TGGTGTTTTAGTTGTTGGTTATGGTGTTCAAGGTAAAGATGATGAAGGTCCAGTGTTAAA
CAGAAGACAAACCATTGTTATCCACAAGAATGAAGATAATAAAGTTGAATCCTCTGATGA
TTCATCTGATAGTGTTAGACCAAAGGCAAATAATTATTGGATCGTTAAAAATTCATGGGG
TACCTCATGGGGTATAAAAGGTTACATTTTAATGTCAAAGGATAGAAAGAATAATTGTGG
TATTGCATCAGTTAGCTCTTATCCACTTGCCTAGATTTATGGTTCCAAAATGAATAGGAG
AATGTTTGGATCTATCTAGTAACCTGAAATGTTTTTCTATTAAAAAAATAAAAATAAAAA
TAATAATTTCTAATTGT
sequence update 1998. 6.10
Translated Amino Acid sequence 
---SGVYYEPKCSPTELDHGVLVVGYGVQGKDDEGPVLNRRQTIVIHKNEDNKVESSDDS
SDSVRPKANNYWIVKNSWGTSWGIKGYILMSKDRKNNCGIASVSSYPLA*iygskmnrrm
fgsi**pemffy*knknknnnf*l
Translated Amino Acid sequence (All Frames) 
Frame A:
---rlvcimsqnvlqlnwimvf*llvmvfkvkmmkvqc*tedkpllstrmkiiklnplmi
hlivldqrqiiigslkihgvphgv*kvtf*cqrieriivvlhqlalihlprfmvpk*ige
cldlssnlkcfsikkikikiiisnc


Frame B:
---vwcvl*akmfsn*igswcfscwlwcsr*r**rssvkqktnhcypqe*r**s*il**f
i**c*tkgk*lldr*kfmgylmgykrlhfnvkg*ke*lwycis*llstcldlwfqne*en
vwiylvt*nvfllkk*k*k**fli


Frame C:
---SGVYYEPKCSPTELDHGVLVVGYGVQGKDDEGPVLNRRQTIVIHKNEDNKVESSDDS
SDSVRPKANNYWIVKNSWGTSWGIKGYILMSKDRKNNCGIASVSSYPLA*iygskmnrrm
fgsi**pemffy*knknknnnf*l
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLG150 (SLG150Q) /CSM/SL/SLG1-C/SLG150Q.Seq.d/                        775   0.0
SSA475 (SSA475Q) /CSM/SS/SSA4-D/SSA475Q.Seq.d/                        753   0.0
SSM544 (SSM544Q) /CSM/SS/SSM5-B/SSM544Q.Seq.d/                        737   0.0
SSM471 (SSM471Q) /CSM/SS/SSM4-C/SSM471Q.Seq.d/                        737   0.0
SSL687 (SSL687Q) /CSM/SS/SSL6-D/SSL687Q.Seq.d/                        737   0.0
SSK734 (SSK734Q) /CSM/SS/SSK7-B/SSK734Q.Seq.d/                        737   0.0
SSK727 (SSK727Q) /CSM/SS/SSK7-B/SSK727Q.Seq.d/                        737   0.0
SSK657 (SSK657Q) /CSM/SS/SSK6-C/SSK657Q.Seq.d/                        737   0.0
SSK481 (SSK481Q) /CSM/SS/SSK4-D/SSK481Q.Seq.d/                        737   0.0
SSK121 (SSK121Q) /CSM/SS/SSK1-A/SSK121Q.Seq.d/                        737   0.0
own update 2001. 8.27
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU039669) Dictyostelium discoideum slug cDNA, clone SLG150.      775   0.0    1
(C89651) Dictyostelium discoideum slug cDNA, clone SSA475.        753   0.0    1
(X03344) Dictyostelium discoideum mRNA for cysteine proteina...   737   0.0    1
(AU052446) Dictyostelium discoideum slug cDNA, clone SLD329.      737   0.0    1
(AU052270) Dictyostelium discoideum slug cDNA, clone SLA477.      737   0.0    1
(AU051994) Dictyostelium discoideum slug cDNA, clone SSB127.      737   0.0    1
(AU051886) Dictyostelium discoideum slug cDNA, clone SSC322.      737   0.0    1
(AU039933) Dictyostelium discoideum slug cDNA, clone SLG775.      737   0.0    1
(AU039554) Dictyostelium discoideum slug cDNA, clone SLE742.      737   0.0    1
(AU039485) Dictyostelium discoideum slug cDNA, clone SLH872.      737   0.0    1
dna update 2009. 5.17
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P04989) RecName: Full=Cysteine proteinase 2;          EC=3.4.22...   207   9e-53
(P54640) RecName: Full=Cysteine proteinase 5;          EC=3.4.22...   103   2e-21
L36205_1(L36205|pid:none) Dictyostelium discoideum cysteine prot...   103   2e-21
AF358668_1(AF358668|pid:none) Oncorhynchus mykiss procathepsin L...   101   7e-21
BT057383_1(BT057383|pid:none) Salmo salar clone ssal-evf-519-083...   101   7e-21
BT081306_1(BT081306|pid:none) Caligus clemensi clone ccle-evs-50...   101   7e-21
U61296_1(U61296|pid:none) Oncorhynchus mykiss cathepsin L mRNA, ...   101   7e-21
BT074607_1(BT074607|pid:none) Osmerus mordax clone omor-rgc-519-...   100   1e-20
EF535003_1(EF535003|pid:none) Misgurnus mizolepis cathepsin L mR...   100   2e-20
BT058408_1(BT058408|pid:none) Salmo salar clone Contig454 Cathep...   100   2e-20
protein update 2009. 6. 4
PSORT 

 psg: 0.61  gvh: 0.40  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 36.0 %: nuclear
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for SLG150 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLG150Z
3' end seq. 
>SLG150Z.Seq
----------ACGTCTGGTGTGTATTATGAGCCAAAATGTTCTCCAACTGAATTGGATCA
TGGTGTTTTAGTTGTTGGTTATGGTGTTCAAGGTAAAGATGATGAAGGTCCAGTGTTAAA
CAGAAGACAAACCATTGTTATCCACAAGAATGAAGATAATAAAGTTGAATCCTCTGATGA
TTCATCTGATAGTGTTAGACCAAAGGCAAATAATTATTGGATCGTTAAAAATTCATGGGG
TACCTCATGGGGTATAAAAGGTTACATTTTAATGTCAAAGGATAGAAAGAATAATTGTGG
TATTGCATCAGTTAGCTCTTATCCACTTGCCTAGATTTATGGTTCCAAAATGAATAGGAG
AATGTTTGGATCTATCTAGTAACCTGAAATGTTTTTCTATTAAAAAAATAAAAATAAAAA
TAATAATTTCTAATTGT
Length of 3' end seq. 427
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -