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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFB266
Library AF
(Link to library)
Clone ID AFB266
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13859-1
Original site URL
Representative seq. ID AFB266F
(Link to Original site)
Representative DNA sequence 
>AFB266 (AFB266Q) /CSM/AF/AFB2-C/AFB266Q.Seq.d/
ACAAAAACCCGCATTTTTTCAAAGAAACCTATCTCTCTATATATATATACCCACATAAAA
TGTCAATACCAAAAATTAGTCAAGTTAAAGATTTAACACGTATTGAAAGAATTGGAGCAC
ATTCACATATTAGAGGATTAGGAATTGATGATTCATTAGAACCAAGAGAGATATCTCAAG
GTATGGTTGGACAAGTTGGAGCAAGAAAAGCAGCAGGATTAATATTACAAATGATAAAGG
AAGGTAAGATAGCAGGTAGAGCAATATTAATTGGAGGTGAACCAGGTACAGGTAAGACAG
CGATTGCCATGGGTATGGCACAATCATTAGGAGAGAAGACTCCATTTACAGCAATTGCAG
CCAGTGAAATATTTTCATTGGAAATGAGTAAAACCGAAGCATTAACACAAGCATTCCGTC
GTTCAATTGGCGTACGTATTAAAXXXXXXXXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence 
KNPHFFKETYLSIYIYPHKMSIPKISQVKDLTRIERIGAHSHIRGLGIDDSLEPREISQG
MVGQVGARKAAGLILQMIKEGKIAGRAILIGGEPGTGKTAIAMGMAQSLGEKTPFTAIAA
SEIFSLEMSKTEALTQAFRRSIGVRI---
Translated Amino Acid sequence (All Frames) 
Frame A:
tktrifskkpislyiythikcqyqklvklki*hvlkelehihiled*elmih*nqerylk
vwldkleqekqqd*yyk**rkvr*qveqy*levnqvqvrqrlpwvwhnh*errlhlqqlq
pvkyfhwk*vkpkh*hkhsvvqlayvl---


Frame B:
qkpaffqrnlslyiyipt*nvntkn*ss*rfnty*knwstfty*rirn**firtkrdisr
ygwtswskkssrinitndkgr*dsr*sninwr*tryr*dsdchgygtiirredsiysncs
q*nifigne*nrsintsipsfnwrty*---


Frame C:
KNPHFFKETYLSIYIYPHKMSIPKISQVKDLTRIERIGAHSHIRGLGIDDSLEPREISQG
MVGQVGARKAAGLILQMIKEGKIAGRAILIGGEPGTGKTAIAMGMAQSLGEKTPFTAIAA
SEIFSLEMSKTEALTQAFRRSIGVRI---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFE434 (SFE434Q) /CSM/SF/SFE4-B/SFE434Q.Seq.d/                        807   0.0
SFD887 (SFD887Q) /CSM/SF/SFD8-D/SFD887Q.Seq.d/                        807   0.0
SFC365 (SFC365Q) /CSM/SF/SFC3-C/SFC365Q.Seq.d/                        807   0.0
CHC484 (CHC484Q) /CSM/CH/CHC4-D/CHC484Q.Seq.d/                        807   0.0
AFL591 (AFL591Q) /CSM/AF/AFL5-D/AFL591Q.Seq.d/                        807   0.0
AFB266 (AFB266Q) /CSM/AF/AFB2-C/AFB266Q.Seq.d/                        807   0.0
SFG570 (SFG570Q) /CSM/SF/SFG5-C/SFG570Q.Seq.d/                        791   0.0
CFF183 (CFF183Q) /CSM/CF/CFF1-D/CFF183Q.Seq.d/                        791   0.0
SFJ220 (SFJ220Q) /CSM/SF/SFJ2-A/SFJ220Q.Seq.d/                        785   0.0
VFF618 (VFF618Q) /CSM/VF/VFF6-A/VFF618Q.Seq.d/                        781   0.0
own update 2009. 4. 3
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BU722212|BU722212.1 SJMAEH02 SJM Schistosoma japonicum cDNA, mRNA sequence.    54  4e-10  3
BU799415|BU799415.1 SJF2BNC08 SJF Schistosoma japonicum cDNA, mRNA sequence.    54  6e-08  3
BW275990|BW275990.1 Ciona intestinalis cDNA, clone:cign074a02, 5' end, single read.    40  1e-07  4
BU724315|BU724315.1 SJMBFH01 SJM Schistosoma japonicum cDNA, mRNA sequence.    54  1e-07  3
BU724139|BU724139.1 SJMBDH10 SJM Schistosoma japonicum cDNA, mRNA sequence.    54  1e-07  3
BU804312|BU804312.1 SJFBJH04 SJF Schistosoma japonicum cDNA, mRNA sequence.    54  1e-07  3
BU795008|BU795008.1 SJF2DJG06 SJF Schistosoma japonicum cDNA, mRNA sequence.    54  1e-07  3
BU795521|BU795521.1 SJF2DPD04 SJF Schistosoma japonicum cDNA, mRNA sequence.    54  2e-07  3
BU793866|BU793866.1 SJF2BUD05 SJF Schistosoma japonicum cDNA, mRNA sequence.    54  2e-07  3
BU795746|BU795746.1 SJF2DUG07 SJF Schistosoma japonicum cDNA, mRNA sequence.    54  2e-07  3
dna update 2003. 7.23
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54UW5) RecName: Full=RuvB-like helicase 2;          EC=3.6.1.-;     244   8e-64
BC123265_1(BC123265|pid:none) Xenopus laevis reptin, mRNA (cDNA ...   211   8e-54
CR761457_1(CR761457|pid:none) Xenopus tropicalis finished cDNA, ...   211   8e-54
BC047966_1(BC047966|pid:none) Xenopus laevis RuvB-like protein 2...   209   2e-53
(Q9DE27) RecName: Full=RuvB-like 2;          EC=3.6.1.-; AltName...   209   2e-53
BC008355_1(BC008355|pid:none) Homo sapiens RuvB-like 2 (E. coli)...   205   3e-52
(Q9Y230) RecName: Full=RuvB-like 2;          EC=3.6.1.-; AltName...   205   3e-52
AF151804_1(AF151804|pid:none) Homo sapiens CGI-46 protein mRNA, ...   205   3e-52
BC098042_1(BC098042|pid:none) Rattus norvegicus RuvB-like protei...   204   1e-51
AK135404_1(AK135404|pid:none) Mus musculus 12 days embryo female...   202   3e-51
protein update 2009. 3.26
PSORT 

 psg: 0.84  gvh: 0.28  alm: 0.46  top: 0.40  tms: 0.00  mit: 0.27  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 36.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: plasma membrane
	  4.0 %: endoplasmic reticulum

>> prediction for AFB266 is cyt
5' end seq. ID AFB266F
5' end seq. 
>AFB266F.Seq
ACAAAAACCCGCATTTTTTCAAAGAAACCTATCTCTCTATATATATATACCCACATAAAA
TGTCAATACCAAAAATTAGTCAAGTTAAAGATTTAACACGTATTGAAAGAATTGGAGCAC
ATTCACATATTAGAGGATTAGGAATTGATGATTCATTAGAACCAAGAGAGATATCTCAAG
GTATGGTTGGACAAGTTGGAGCAAGAAAAGCAGCAGGATTAATATTACAAATGATAAAGG
AAGGTAAGATAGCAGGTAGAGCAATATTAATTGGAGGTGAACCAGGTACAGGTAAGACAG
CGATTGCCATGGGTATGGCACAATCATTAGGAGAGAAGACTCCATTTACAGCAATTGCAG
CCAGTGAAATATTTTCATTGGAAATGAGTAAAACCGAAGCATTAACACAAGCATTCCGTC
GTTCAATTGGCGTACGTATTAAA----------
Length of 5' end seq. 443
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -