SLG134
Library SL
(Link to library)
Clone ID SLG134
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15444-1
Original site URL
Representative seq. ID SLG134E
(Link to Original site)
Representative DNA sequence
>SLG134 (SLG134Q) /CSM/SL/SLG1-B/SLG134Q.Seq.d/
GATTAGGTGAATTAGTTCACATGAGAAACGCTTCATGTGTTGCCCTCACTGGTGTCAACT
CTGCTGACTCAAACGAACTCGCTTTATTAGTTGAATCCGCCAAACAAATGTTCAACAATA
ACAGTGAACACAGAAAGACCTGGGGTGGTAACACTTTATCTGGTCCAGCTCGTGCTATCT
TAGCCAAACGTCAAAAAGCTGAAGCCAAAGAAAGTTTAGCCAAATCAAAGATCTAAGCTC
TTTAATAGTTTAGCGAGACTCTCACTCTTTTTTTAAATAATCAAATAAAATAAAGGTTCT
TTAAA
sequence update 1998. 6. 9
Translated Amino Acid sequence
LGELVHMRNASCVALTGVNSADSNELALLVESAKQMFNNNSEHRKTWGGNTLSGPARAIL
AKRQKAEAKESLAKSKI*al**fsetltlflnnqik*rffk


Translated Amino Acid sequence (All Frames)
Frame A:
d*vn*ft*etlhvlpslvstlltqtnsly*lnppnkcstitvnterpgvvtlylvqlvls
*pnvkklkpkkv*pnqrsklfnslarlslff*iik*nkgsl


Frame B:
ir*isshekrfmccphwcqlc*lkrtrfis*irqtnvqq*q*tqkdlgw*hfiwssscyl
sqtsks*sqrkfsqikdlssliv*rdshsffk*snkikvl*


Frame C:
LGELVHMRNASCVALTGVNSADSNELALLVESAKQMFNNNSEHRKTWGGNTLSGPARAIL
AKRQKAEAKESLAKSKI*al**fsetltlflnnqik*rffk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSC868 (VSC868Q) /CSM/VS/VSC8-C/VSC868Q.Seq.d/ 563 e-160
VSB774 (VSB774Q) /CSM/VS/VSB7-D/VSB774Q.Seq.d/ 563 e-160
SSI357 (SSI357Q) /CSM/SS/SSI3-C/SSI357Q.Seq.d/ 563 e-160
SLG494 (SLG494Q) /CSM/SL/SLG4-D/SLG494Q.Seq.d/ 563 e-160
SLG134 (SLG134Q) /CSM/SL/SLG1-B/SLG134Q.Seq.d/ 563 e-160
SLB788 (SLB788Q) /CSM/SL/SLB7-D/SLB788Q.Seq.d/ 563 e-160
FC-BF14 (FC-BF14Q) /CSM/FC/FC-BF/FC-BF14Q.Seq.d/ 563 e-160
FC-BB05 (FC-BB05Q) /CSM/FC/FC-BB/FC-BB05Q.Seq.d/ 563 e-160
FC-BB03 (FC-BB03Q) /CSM/FC/FC-BB/FC-BB03Q.Seq.d/ 563 e-160
FC-AW08 (FC-AW08Q) /CSM/FC/FC-AW/FC-AW08Q.Seq.d/ 563 e-160

own update 2001. 8.27
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AC116100) Dictyostelium discoideum chromosome 2 map 6163571... 529 e-158 2
(C23695) Dictyostelium discoideum gamete cDNA, clone FC-AK02. 529 e-158 2
(AU284631) Dictyostelium discoideum gamete cDNA clone:FC-BF1... 529 e-158 2
(AU284449) Dictyostelium discoideum gamete cDNA clone:FC-AW0... 529 e-158 2
(AU284368) Dictyostelium discoideum gamete cDNA clone:FC-AP1... 529 e-158 2
(AU284518) Dictyostelium discoideum gamete cDNA clone:FC-BB0... 529 e-158 2
(AU284520) Dictyostelium discoideum gamete cDNA clone:FC-BB0... 529 e-158 2
(AU284378) Dictyostelium discoideum gamete cDNA clone:FC-AQ1... 529 e-158 2
(AU034139) Dictyostelium discoideum slug cDNA, clone SLB788. 529 e-158 2
(C90399) Dictyostelium discoideum slug cDNA, clone SSI357. 529 e-158 2
dna update 2009. 5.17
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54ZD1) RecName: Full=60S ribosomal protein L7a; 129 2e-29
CR940348_866(CR940348|pid:none) Theileria annulata strain Ankara... 57 3e-07
AB221488_1(AB221488|pid:none) Gallus gallus mRNA for ribosomal p... 54 2e-06
BC122243_1(BC122243|pid:none) Danio rerio zgc:153325, mRNA (cDNA... 52 5e-06
AY769275_1(AY769275|pid:none) Bombyx mori ribosomal protein L7A ... 52 9e-06
(O76732) RecName: Full=60S ribosomal protein L7a; 51 1e-05
DQ440224_1(DQ440224|pid:none) Aedes aegypti clone AET-254 riboso... 51 1e-05
(Q2TBQ5) RecName: Full=60S ribosomal protein L7a; &BC109810_1(B... 51 1e-05
AB056665_1(AB056665|pid:none) Homo sapiens RP-L7a mRNA for ribos... 50 2e-05
BC065176_1(BC065176|pid:none) Mus musculus ribosomal protein L7A... 50 2e-05
protein update 2009. 7. 5
PSORT

psg: 0.90 gvh: 0.53 alm: 0.49 top: 0.50 tms: 0.00 mit: 0.25 mip: 0.03
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.30 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
24.0 %: mitochondrial
24.0 %: nuclear
8.0 %: vacuolar
4.0 %: endoplasmic reticulum

>> prediction for SLG134 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SLG134E
Full length Seq.
>SLG134E.Seq
GATTAGGTGAATTAGTTCACATGAGAAACGCTTCATGTGTTGCCCTCACTGGTGTCAACT
CTGCTGACTCAAACGAACTCGCTTTATTAGTTGAATCCGCCAAACAAATGTTCAACAATA
ACAGTGAACACAGAAAGACCTGGGGTGGTAACACTTTATCTGGTCCAGCTCGTGCTATCT
TAGCCAAACGTCAAAAAGCTGAAGCCAAAGAAAGTTTAGCCAAATCAAAGATCTAAGCTC
TTTAATAGTTTAGCGAGACTCTCACTCTTTTTTTAAATAATCAAATAAAATAAAGGTTCT
TTAAA
Length of full length seq. 305