SLG130
Library SL
(Link to library)
Clone ID SLG130
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16419-1
Original site URL
Representative seq. ID SLG130Z
(Link to Original site)
Representative DNA sequence
>SLG130 (SLG130Q) /CSM/SL/SLG1-B/SLG130Q.Seq.d/
XXXXXXXXXXACCACCACCACCAGAAGTTTGTTCATTAAGATGCCCACCAAAACATGAAT
GTAAATTTGATGATCATGGTAAAAAATGTTGTGTAAAGATTCATTGTGATGAAGTTTGTG
ATTTAGATTGTGGTAGAGGTTTTGAATGTAAAATTAGACATGATGGTTCAAAATGTTGTG
TCCGTTCAGAAAGACCACACCCACCACAACATGAAAAATGTAATAAGAGATGCCCACCAG
GCCATGAATGTAAAGTTGATCAACATGGAAAAGAATGTTGCGTTGTTGCCCATAGACCAC
CACCAAAATGCTCTTTAAGATGTCCACCAAGACATGAATGTAGAGTCAACCACTTTGGTG
AAGAATGTTGTGTTAAAGTTCACCACGATAAATGTTCATTGAGATGTCCACCAGGCCATG
AATGTAAAGTTGATCAACATGGAAAAGAATGTTGCGTTGTTGCCCATAGACCACCACCAA
AATGCTCATTAAGATGTCCACCAAAACATGAATGTAGAATCAATCACTTTGGTGAAGAAT
GCTGTGTTAAAAGTAGAAATGATTGTTTAACTTGTGAAGACCTAAACTGTGAAAGAAAAG
GTTTACATTGTGCCATGAAAACTGTACCAATTGATAAAGAAAATTGTTGTGAAAAAGTTC
CAGTATGTTATTCCACTAATCCATTATTAGATGGTGGTCATGGTTTTATTTAAAG
sequence update 1998. 6. 9
Translated Amino Acid sequence
---PPPPEVCSLRCPPKHECKFDDHGKKCCVKIHCDEVCDLDCGRGFECKIRHDGSKCCV
RSERPHPPQHEKCNKRCPPGHECKVDQHGKECCVVAHRPPPKCSLRCPPRHECRVNHFGE
ECCVKVHHDKCSLRCPPGHECKVDQHGKECCVVAHRPPPKCSLRCPPKHECRINHFGEEC
CVKSRNDCLTCEDLNCERKGLHCAMKTVPIDKENCCEKVPVCYSTNPLLDGGHGFI*


Translated Amino Acid sequence (All Frames)
Frame A:
---PPPPEVCSLRCPPKHECKFDDHGKKCCVKIHCDEVCDLDCGRGFECKIRHDGSKCCV
RSERPHPPQHEKCNKRCPPGHECKVDQHGKECCVVAHRPPPKCSLRCPPRHECRVNHFGE
ECCVKVHHDKCSLRCPPGHECKVDQHGKECCVVAHRPPPKCSLRCPPKHECRINHFGEEC
CVKSRNDCLTCEDLNCERKGLHCAMKTVPIDKENCCEKVPVCYSTNPLLDGGHGFI*


Frame B:
---hhhqkfvh*dahqnmnvnlmimvknvv*rfivmkfvi*ivvevlnvkldmmvqnvvs
vqkdhthhnmknvirdahqamnvklinmeknvallpidhhqnal*dvhqdmnvesttlvk
nvvlkfttinvh*dvhqamnvklinmeknvallpidhhqnah*dvhqnmnvesitlvkna
vlkvemiv*lvkt*tvkekvyivp*klyqlikkivvkkfqyviplihy*mvvmvlfk


Frame C:
---tttrslfikmptkt*m*i**sw*kmlckdsl**sl*frlw*rf*m*n*t*wfkmlcp
frkttpttt*km**emptrp*m*s*stwkrmlrccp*tttkmlfkmstkt*m*sqplw*r
mlc*sspr*mfiemstrp*m*s*stwkrmlrccp*tttkmlikmstkt*m*nqslw*rml
c*k*k*lfnl*rpkl*kkrftlchenctn**rkll*ksssmlfh*siirwwswfylk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLG130 (SLG130Q) /CSM/SL/SLG1-B/SLG130Q.Seq.d/ 1398 0.0
SLE706 (SLE706Q) /CSM/SL/SLE7-A/SLE706Q.Seq.d/ 1398 0.0
SSF378 (SSF378Q) /CSM/SS/SSF3-D/SSF378Q.Seq.d/ 1392 0.0
SLH866 (SLH866Q) /CSM/SL/SLH8-C/SLH866Q.Seq.d/ 1382 0.0
SLB753 (SLB753Q) /CSM/SL/SLB7-C/SLB753Q.Seq.d/ 1372 0.0
AHF349 (AHF349Q) /CSM/AH/AHF3-C/AHF349Q.Seq.d/ 1340 0.0
CFC513 (CFC513Q) /CSM/CF/CFC5-A/CFC513Q.Seq.d/ 1334 0.0
SFI482 (SFI482Q) /CSM/SF/SFI4-D/SFI482Q.Seq.d/ 1332 0.0
AHD802 (AHD802Q) /CSM/AH/AHD8-A/AHD802Q.Seq.d/ 1326 0.0
AFF122 (AFF122Q) /CSM/AF/AFF1-A/AFF122Q.Seq.d/ 1326 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(U25144) Dictyostelium discoideum spore coat protein SP87 (P... 1398 0.0 1
(AU039658) Dictyostelium discoideum slug cDNA, clone SLG130. 1398 0.0 1
(AU039532) Dictyostelium discoideum slug cDNA, clone SLE706. 1398 0.0 1
(C92815) Dictyostelium discoideum slug cDNA, clone SSF378. 1392 0.0 1
(AC117267) Dictyostelium discoideum chromosome 2 map 5836255... 1390 0.0 1
(AU034110) Dictyostelium discoideum slug cDNA, clone SLB753. 1372 0.0 1
(AU039480) Dictyostelium discoideum slug cDNA, clone SLH866. 1336 0.0 2
(BJ402714) Dictyostelium discoideum cDNA clone:dds17d22, 3' ... 1324 0.0 1
(BJ374239) Dictyostelium discoideum cDNA clone:ddc6i03, 3' e... 1324 0.0 1
(BJ350917) Dictyostelium discoideum cDNA clone:dda41n08, 3' ... 1322 0.0 1
dna update 2009. 5.17
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC117267_7(AC117267|pid:none) Dictyostelium discoideum chromosom... 552 e-156
(P15270) RecName: Full=Spore coat protein SP60; Flags: Precursor... 187 3e-46
X52105_1(X52105|pid:none) Dictyostelium discoideum SP60 gene for... 110 5e-23
(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;... 89 2e-16
S07638(S07638;A60942;B60942) spore coat protein SP96 precursor -... 76 9e-13
(P14328) RecName: Full=Spore coat protein SP96; &AC117075_49(AC... 76 9e-13
(Q04503) RecName: Full=Prespore protein Dp87; Flags: Precursor; 74 3e-12
(P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr... 72 2e-11
D13973_1(D13973|pid:none) Dictyostelium discoideum gene for Dp87... 70 5e-11
(P54704) RecName: Full=Spore coat protein SP85; AltName: Full=Ce... 63 8e-09
protein update 2009. 6. 4
PSORT

psg: 0.49 gvh: 0.31 alm: 0.56 top: 0.53 tms: 0.00 mit: 0.23 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: nuclear
28.0 %: cytoplasmic
16.0 %: mitochondrial
8.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for SLG130 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLG130Z
3' end seq.
>SLG130Z.Seq
----------ACCACCACCACCAGAAGTTTGTTCATTAAGATGCCCACCAAAACATGAAT
GTAAATTTGATGATCATGGTAAAAAATGTTGTGTAAAGATTCATTGTGATGAAGTTTGTG
ATTTAGATTGTGGTAGAGGTTTTGAATGTAAAATTAGACATGATGGTTCAAAATGTTGTG
TCCGTTCAGAAAGACCACACCCACCACAACATGAAAAATGTAATAAGAGATGCCCACCAG
GCCATGAATGTAAAGTTGATCAACATGGAAAAGAATGTTGCGTTGTTGCCCATAGACCAC
CACCAAAATGCTCTTTAAGATGTCCACCAAGACATGAATGTAGAGTCAACCACTTTGGTG
AAGAATGTTGTGTTAAAGTTCACCACGATAAATGTTCATTGAGATGTCCACCAGGCCATG
AATGTAAAGTTGATCAACATGGAAAAGAATGTTGCGTTGTTGCCCATAGACCACCACCAA
AATGCTCATTAAGATGTCCACCAAAACATGAATGTAGAATCAATCACTTTGGTGAAGAAT
GCTGTGTTAAAAGTAGAAATGATTGTTTAACTTGTGAAGACCTAAACTGTGAAAGAAAAG
GTTTACATTGTGCCATGAAAACTGTACCAATTGATAAAGAAAATTGTTGTGAAAAAGTTC
CAGTATGTTATTCCACTAATCCATTATTAGATGGTGGTCATGGTTTTATTTAAAG
Length of 3' end seq. 705
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -