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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLF872
Library SL
(Link to library)
Clone ID SLF872
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11996-1
Original site URL
Representative seq. ID SLF872Z
(Link to Original site)
Representative DNA sequence 
>SLF872 (SLF872Q) /CSM/SL/SLF8-C/SLF872Q.Seq.d/
XXXXXXXXXXTGATTTCCCAGAACCAGAATGGACTCATGTCTCTGAACATGCCAAAGCTT
TCATTAGAAACTTAATTGTCAAAGATCCAGATCAACGTCATACTGCCAAACAATGTCTTG
ATGACCTTTGGCTCTCTGGTAGTGATCAATCAATTGGTTCTGCTGCTGATCTCCACTCTC
ATTTCGCTGAAAAGATGAAGAAATATAATGACCAAAGAAGAGGTGGTCAATCTTCAAATA
ATTAAATTTAATAATAATAATAATAA
sequence update 1998. 9.10
Translated Amino Acid sequence 
---DFPEPEWTHVSEHAKAFIRNLIVKDPDQRHTAKQCLDDLWLSGSDQSIGSAADLHSH
FAEKMKKYNDQRRGGQSSNN*i******
Translated Amino Acid sequence (All Frames) 
Frame A:
---DFPEPEWTHVSEHAKAFIRNLIVKDPDQRHTAKQCLDDLWLSGSDQSIGSAADLHSH
FAEKMKKYNDQRRGGQSSNN*i******


Frame B:
---isqnqnglmslnmpklslet*lskiqinvilpnnvlmtfgslvvinqlvlllistli
slkr*rnimtkeevvnlqiikfnnnnn


Frame C:
---fprtrmdscl*tcqsfh*klncqrsrstsycqtms**plalw**sinwfcc*splsf
r*kdeei**pkkrwsifk*lnliiiii
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSK695 (SSK695Q) /CSM/SS/SSK6-D/SSK695Q.Seq.d/                        448   e-125
SSJ513 (SSJ513Q) /CSM/SS/SSJ5-A/SSJ513Q.Seq.d/                        448   e-125
SSJ377 (SSJ377Q) /CSM/SS/SSJ3-D/SSJ377Q.Seq.d/                        448   e-125
SSI101 (SSI101Q) /CSM/SS/SSI1-A/SSI101Q.Seq.d/                        448   e-125
SSH745 (SSH745Q) /CSM/SS/SSH7-B/SSH745Q.Seq.d/                        448   e-125
SSH378 (SSH378Q) /CSM/SS/SSH3-D/SSH378Q.Seq.d/                        448   e-125
SLI715 (SLI715Q) /CSM/SL/SLI7-A/SLI715Q.Seq.d/                        448   e-125
SLF872 (SLF872Q) /CSM/SL/SLF8-C/SLF872Q.Seq.d/                        448   e-125
SLF532 (SLF532Q) /CSM/SL/SLF5-B/SLF532Q.Seq.d/                        448   e-125
SLD285 (SLD285Q) /CSM/SL/SLD2-D/SLD285Q.Seq.d/                        448   e-125
own update 2001. 8.27
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...   448   e-122  1
(AU053468) Dictyostelium discoideum slug cDNA, clone SLI715.      448   e-122  1
(AU053175) Dictyostelium discoideum slug cDNA, clone SLF872.      448   e-122  1
(AU053023) Dictyostelium discoideum slug cDNA, clone SLF532.      448   e-122  1
(AU052419) Dictyostelium discoideum slug cDNA, clone SLD285.      448   e-122  1
(AU038457) Dictyostelium discoideum slug cDNA, clone SSH745.      448   e-122  1
(AU038180) Dictyostelium discoideum slug cDNA, clone SSH378.      448   e-122  1
(AU034202) Dictyostelium discoideum slug cDNA, clone SLC252.      448   e-122  1
(C94009) Dictyostelium discoideum slug cDNA, clone SSK695.        448   e-122  1
(C91258) Dictyostelium discoideum slug cDNA, clone SSJ513.        448   e-122  1
dna update 2009. 5.17
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q869W6) RecName: Full=Probable calcium/calmodulin-dependent ser...   166   3e-40
AB076903_1(AB076903|pid:none) Ciona intestinalis Ci-CaM-K mRNA f...    59   7e-08
AE014135_81(AE014135|pid:none) Drosophila melanogaster chromosom...    53   3e-06
AE014135_86(AE014135|pid:none) Drosophila melanogaster chromosom...    53   3e-06
(Q63450) RecName: Full=Calcium/calmodulin-dependent protein kina...    51   1e-05
(Q14012) RecName: Full=Calcium/calmodulin-dependent protein kina...    51   1e-05
AC116982_54(AC116982|pid:none) Dictyostelium discoideum chromoso...    51   1e-05
PDBF(1A06) MOL_ID: 1; MOLECULE: CALCIUM/CALMODULIN-DEPENDENT PRO...    51   1e-05
AY890885_1(AY890885|pid:none) Synthetic construct Homo sapiens c...    51   1e-05
L24907_1(L24907|pid:none) Rattus norvegicus calcium/calmodulin-d...    51   1e-05
protein update 2009. 6. 4
PSORT 

 psg: 0.75  gvh: 0.49  alm: 0.57  top: 0.53  tms: 0.00  mit: 0.10  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 36.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for SLF872 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLF872Z
3' end seq. 
>SLF872Z.Seq
----------TGATTTCCCAGAACCAGAATGGACTCATGTCTCTGAACATGCCAAAGCTT
TCATTAGAAACTTAATTGTCAAAGATCCAGATCAACGTCATACTGCCAAACAATGTCTTG
ATGACCTTTGGCTCTCTGGTAGTGATCAATCAATTGGTTCTGCTGCTGATCTCCACTCTC
ATTTCGCTGAAAAGATGAAGAAATATAATGACCAAAGAAGAGGTGGTCAATCTTCAAATA
ATTAAATTTAATAATAATAATAATAA
Length of 3' end seq. 256
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -