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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLF813
Library SL
(Link to library)
Clone ID SLF813
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15444-1
Original site URL
Representative seq. ID SLF813Z
(Link to Original site)
Representative DNA sequence 
>SLF813 (SLF813Q) /CSM/SL/SLF8-A/SLF813Q.Seq.d/
XXXXXXXXXXTTCATGTGTTGCCCTCACTGGTGTCAACTCTGCTGACTCAAACGAACTCG
CTTTATTAGTTGAATCCGCCAAACAAATGTTCAACAATAACAGTGAACACAGAAAGACCT
GGGGTGGTAACACTTTATCTGGTCCAGCTCGTGCTATCTTAGCCAAACGTCAAAAAGCTG
AAGCCAAAGAAAGTTTAGCCAAATCAAAGATCTAAGCTCTTTAATAGTTTAGCGAGACTC
TCACTCTTTTTTTAAATAATCAAATAAAATAAAGGTTCTTAAAAAAAA
sequence update 1998. 9.10
Translated Amino Acid sequence 
---SCVALTGVNSADSNELALLVESAKQMFNNNSEHRKTWGGNTLSGPARAILAKRQKAE
AKESLAKSKI*al**fsetltlflnnqik*rflkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---SCVALTGVNSADSNELALLVESAKQMFNNNSEHRKTWGGNTLSGPARAILAKRQKAE
AKESLAKSKI*al**fsetltlflnnqik*rflkk


Frame B:
---hvlpslvstlltqtnsly*lnppnkcstitvnterpgvvtlylvqlvls*pnvkklk
pkkv*pnqrsklfnslarlslff*iik*nkgs*kk


Frame C:
---mccphwcqlc*lkrtrfis*irqtnvqq*q*tqkdlgw*hfiwssscylsqtsks*s
qrkfsqikdlssliv*rdshsffk*snkikvlkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSC868 (VSC868Q) /CSM/VS/VSC8-C/VSC868Q.Seq.d/                        494   e-139
VSB774 (VSB774Q) /CSM/VS/VSB7-D/VSB774Q.Seq.d/                        494   e-139
SSI357 (SSI357Q) /CSM/SS/SSI3-C/SSI357Q.Seq.d/                        494   e-139
SLJ620 (SLJ620Q) /CSM/SL/SLJ6-A/SLJ620Q.Seq.d/                        494   e-139
SLG494 (SLG494Q) /CSM/SL/SLG4-D/SLG494Q.Seq.d/                        494   e-139
SLG134 (SLG134Q) /CSM/SL/SLG1-B/SLG134Q.Seq.d/                        494   e-139
SLF813 (SLF813Q) /CSM/SL/SLF8-A/SLF813Q.Seq.d/                        494   e-139
SLB788 (SLB788Q) /CSM/SL/SLB7-D/SLB788Q.Seq.d/                        494   e-139
SLB733 (SLB733Q) /CSM/SL/SLB7-B/SLB733Q.Seq.d/                        494   e-139
FC-BF14 (FC-BF14Q) /CSM/FC/FC-BF/FC-BF14Q.Seq.d/                      494   e-139
own update 2002. 7. 6
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC116100) Dictyostelium discoideum chromosome 2 map 6163571...   468   e-137  2
(C23695) Dictyostelium discoideum gamete cDNA, clone FC-AK02.     468   e-137  2
(AU284631) Dictyostelium discoideum gamete cDNA clone:FC-BF1...   468   e-137  2
(AU284449) Dictyostelium discoideum gamete cDNA clone:FC-AW0...   468   e-137  2
(AU284368) Dictyostelium discoideum gamete cDNA clone:FC-AP1...   468   e-137  2
(AU284518) Dictyostelium discoideum gamete cDNA clone:FC-BB0...   468   e-137  2
(AU284520) Dictyostelium discoideum gamete cDNA clone:FC-BB0...   468   e-137  2
(AU284378) Dictyostelium discoideum gamete cDNA clone:FC-AQ1...   468   e-137  2
(AU034139) Dictyostelium discoideum slug cDNA, clone SLB788.      468   e-137  2
(C90399) Dictyostelium discoideum slug cDNA, clone SSI357.        468   e-137  2
dna update 2009. 5.16
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54ZD1) RecName: Full=60S ribosomal protein L7a;                     110   2e-23
BC122243_1(BC122243|pid:none) Danio rerio zgc:153325, mRNA (cDNA...    45   8e-04
CR940348_866(CR940348|pid:none) Theileria annulata strain Ankara...    44   0.002
AB221488_1(AB221488|pid:none) Gallus gallus mRNA for ribosomal p...    44   0.002
(O76732) RecName: Full=60S ribosomal protein L7a;                      44   0.002
DQ440224_1(DQ440224|pid:none) Aedes aegypti clone AET-254 riboso...    43   0.003
AF079312_1(AF079312|pid:none) Anopheles gambiae 60S ribosomal pr...    42   0.009
AY769275_1(AY769275|pid:none) Bombyx mori ribosomal protein L7A ...    42   0.009
DQ675543_1(DQ675543|pid:none) Diaphorina citri clone WHDc0302 ri...    41   0.011
AY674243_1(AY674243|pid:none) Ixodes pacificus clone IP_7_60_92_...    41   0.015
protein update 2009. 6. 4
PSORT 

 psg: 0.90  gvh: 0.52  alm: 0.49  top: 0.33  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.30  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 32.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: endoplasmic reticulum
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for SLF813 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLF813Z
3' end seq. 
>SLF813Z.Seq
----------TTCATGTGTTGCCCTCACTGGTGTCAACTCTGCTGACTCAAACGAACTCG
CTTTATTAGTTGAATCCGCCAAACAAATGTTCAACAATAACAGTGAACACAGAAAGACCT
GGGGTGGTAACACTTTATCTGGTCCAGCTCGTGCTATCTTAGCCAAACGTCAAAAAGCTG
AAGCCAAAGAAAGTTTAGCCAAATCAAAGATCTAAGCTCTTTAATAGTTTAGCGAGACTC
TCACTCTTTTTTTAAATAATCAAATAAAATAAAGGTTCTTAAAAAAAA
Length of 3' end seq. 278
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -