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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLF725
Library SL
(Link to library)
Clone ID SLF725
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16382-1
Original site URL
Representative seq. ID SLF725Z
(Link to Original site)
Representative DNA sequence 
>SLF725 (SLF725Q) /CSM/SL/SLF7-B/SLF725Q.Seq.d/
XXXXXXXXXXTGATCGTATGAACAAAGAATTAACTGCTTTAGCCCCATCAACCATGAAAA
TTAAAATCATTGCTCCACCAGAACGTAAATACTCTGTCTGGATTGGTGGATCTATCTTAG
CTTCACTCTCAACTTTCCAACAAATGTGGATCTCCAAAGAAGAATATGACGAATCAGGTC
CATCAATTGTCCACAGAAAATGTTTCTAAACAATTAAAACTAGTGATGAAAGTGCTTCTC
ACACAAACAAATATATTTAAATGTATAATAATAATAAAATATAATTATTTTTAATGGTTG
TTGATCTTTATCCGACTATCAAA
sequence update 1998. 9.10
Translated Amino Acid sequence 
---DRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGP
SIVHRKCF*tiktsdesashtnkyi*mynnnki*lflmvvdlyptik
Translated Amino Acid sequence (All Frames) 
Frame A:
---DRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGP
SIVHRKCF*tiktsdesashtnkyi*mynnnki*lflmvvdlyptik


Frame B:
---iv*tkn*ll*phqp*klksllhqnvntlsglvdls*lhsqlsnkcgspkknmtnqvh
qlstenvskqlklvmkvlltqtnifkciiiikynyf*wllifirls


Frame C:
---syeqrincfspinhen*nhcstrt*ilcldwwiylsftlnfptnvdlqrri*rirsi
ncpqkmflnn*n***kcfshkqiylnv****niiifngc*slsdyq
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFO858 (VFO858Q) /CSM/VF/VFO8-C/VFO858Q.Seq.d/                        472   e-132
VFO554 (VFO554Q) /CSM/VF/VFO5-C/VFO554Q.Seq.d/                        472   e-132
VFO483 (VFO483Q) /CSM/VF/VFO4-D/VFO483Q.Seq.d/                        472   e-132
VFN701 (VFN701Q) /CSM/VF/VFN7-A/VFN701Q.Seq.d/                        472   e-132
VFM863 (VFM863Q) /CSM/VF/VFM8-C/VFM863Q.Seq.d/                        472   e-132
VFM807 (VFM807Q) /CSM/VF/VFM8-A/VFM807Q.Seq.d/                        472   e-132
VFM725 (VFM725Q) /CSM/VF/VFM7-B/VFM725Q.Seq.d/                        472   e-132
VFM720 (VFM720Q) /CSM/VF/VFM7-A/VFM720Q.Seq.d/                        472   e-132
VFM705 (VFM705Q) /CSM/VF/VFM7-A/VFM705Q.Seq.d/                        472   e-132
VFM283 (VFM283Q) /CSM/VF/VFM2-D/VFM283Q.Seq.d/                        472   e-132
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU053114) Dictyostelium discoideum slug cDNA, clone SLF725.      472   e-138  2
(AU034546) Dictyostelium discoideum slug cDNA, clone SLC450.      472   e-138  2
(C93134) Dictyostelium discoideum slug cDNA, clone SSM592.        472   e-138  2
(AU034374) Dictyostelium discoideum slug cDNA, clone SLC770.      472   e-138  2
(AU053515) Dictyostelium discoideum slug cDNA, clone SLI819.      472   e-138  2
(AU033378) Dictyostelium discoideum slug cDNA, clone SLA695.      472   e-138  2
(AU039244) Dictyostelium discoideum slug cDNA, clone SLH264.      472   e-138  2
(AU034025) Dictyostelium discoideum slug cDNA, clone SLB819.      472   e-138  2
(AU052477) Dictyostelium discoideum slug cDNA, clone SLD390.      472   e-138  2
(AU052773) Dictyostelium discoideum slug cDNA, clone SLK630.      472   e-138  2
dna update 2009. 5.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54H30) RecName: Full=Major actin; AltName: Full=Actin-1; AltNa...   135   6e-31
ATDO(A93223;A92871;S67999;A03004)actin - slime mold (Dictyosteli...   135   6e-31
X03282_1(X03282|pid:none) dictyostelium discoideum gene for acti...   135   6e-31
B23412(B23412)actin 12 - slime mold (Dictyostelium discoideum)        135   6e-31
(Q553U6) RecName: Full=Putative actin-22;  &AC116305_3(AC116305|...   133   2e-30
(P07829) RecName: Full=Actin-3; AltName: Full=Actin-3-sub 1;          133   2e-30
(P02576) RecName: Full=Actin, plasmodial isoform;  &ATFY(A29044;...   132   3e-30
(P02578) RecName: Full=Actin-1;  &ATAX(A92886;A03004) &V00002_1(...   132   3e-30
AY582843_1(AY582843|pid:none) Amoebidium parasiticum actin gene,...   132   3e-30
(Q554S6) RecName: Full=Actin-17; AltName: Full=Actin-2-sub 2;  &...   132   3e-30
protein update 2009. 6. 3
PSORT 

 psg: 0.88  gvh: 0.49  alm: 0.46  top: 0.67  tms: 0.00  mit: 0.27  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 28.0 %: nuclear
	 20.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for SLF725 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLF725Z
3' end seq. 
>SLF725Z.Seq
----------TGATCGTATGAACAAAGAATTAACTGCTTTAGCCCCATCAACCATGAAAA
TTAAAATCATTGCTCCACCAGAACGTAAATACTCTGTCTGGATTGGTGGATCTATCTTAG
CTTCACTCTCAACTTTCCAACAAATGTGGATCTCCAAAGAAGAATATGACGAATCAGGTC
CATCAATTGTCCACAGAAAATGTTTCTAAACAATTAAAACTAGTGATGAAAGTGCTTCTC
ACACAAACAAATATATTTAAATGTATAATAATAATAAAATATAATTATTTTTAATGGTTG
TTGATCTTTATCCGACTATCAAA
Length of 3' end seq. 313
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -