AFK413
Library AF
(Link to library)
Clone ID AFK413
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12894-1
Original site URL
Representative seq. ID AFK413P
(Link to Original site)
Representative DNA sequence
>AFK413 (AFK413Q) /CSM/AF/AFK4-A/AFK413Q.Seq.d/
TATTTTTTTTTTTACAATAATGAAATGAAAATTTTAATATTATCATTTTTCTTAATTTTA
GGAATAAATTTAGTATTTTGTCAAAGTTCCATTTNTTTAAGTGCCACTATTTATGATCAA
AGTCCTGCACGTAATCCTGATTTCGAAATACCAAATGCTCCAAATGCTGTAGTTAANAAT
ATGGTTCTAAGTACTTTAGGTGCTGATAAAACTCCAACCTATTGTTGNGGNGATAATGGN
GTTTATTATAATGGTCAATTTGATATTCATAGCCAATCCACATTTGATTCCTGGTTCCAT
GAAATTGAAGGTATCAGTTATGCCGTTCCATACGAATTAGTTTTAATTGAATCGAAAGAC
GAACCAGGAATTTATGTATATACCTCTAGTTCTTTCTTCCCAATTGATGGTAAAGGTTTT
GATAATAAAACATTATACCCAGATGAAATCACCTATAATGGTCACAACTACCATTTTTGT
ATGAAAATTCATAGTAGTTTTACCTATCATGXXXXXXXXXXAAAGAATTGTAGTGATGGT
GATATTTGTTCAACTGATGGTTGTGATATTGGTTTTGGATGTATTAATTTACCTATAAAC
TGTGATGATGGAAATTATTGTACTAAAGATTATTGTGATCCAACATATGGATGTTTACAT
ATCGAAACTGCAAATTGCACTGAATGTTTAGAAACAGGTTGTATAACTGTTCTCCCATGT
TTCCCAGTAACATGTGACAGTTTAAATAGTAGCCACTGTGTTGCTAGTGCTATGAATTGC
TCAGATAACGATCCATGTACATCAACAGAATGCGTTAATGGAGAATGTACATATGAGTGG
ATTTGTGGATCAGAAGATTCATCATCTGGTGTTGTAGATTCATCATCTGGTGTTGTAGAT
TCATCATCTGATGTTATTGACTCTTCAGATATTATTATTGATTCTTCATCCGATATCCCA
ATACCAACACTATCACCTTCCCCTCAACCATCACGTTTCCCAACTGATACACCAACTAAT
ACACCAATGCCACCAACCCGTCCTCCAACTCCAACTGAAGATCCAAAGATCTATGAAGAT
CCAGAAGATTTAGATAAAGATTGTTTACATTGTAAAGATTTAGGTTGCATACTAACTGGT
AAAAGTTGTGGTTACTTAAAAAATAAAAATACGAAAAATCAAATTGTAAAGAGAATTGTT
GTTCACAACTCCAACTGTTTTTAATTTTCAATTNATTTAAAAAATAAAAAATAATAATAA
AATAAA
sequence update 2001. 6. 1
Translated Amino Acid sequence
YFFFYNNEMKILILSFFLILGINLVFCQSSIXLSATIYDQSPARNPDFEIPNAPNAVVXN
MVLSTLGADKTPTYCXGDNGVYYNGQFDIHSQSTFDSWFHEIEGISYAVPYELVLIESKD
EPGIYVYTSSSFFPIDGKGFDNKTLYPDEITYNGHNYHFCMKIHSSFTYH---

---KNCSDGDICSTDGCDIGFGCINLPINCDDGNYCTKDYCDPTYGCLHIETANCTECLE
TGCITVLPCFPVTCDSLNSSHCVASAMNCSDNDPCTSTECVNGECTYEWICGSEDSSSGV
VDSSSGVVDSSSDVIDSSDIIIDSSSDIPIPTLSPSPQPSRFPTDTPTNTPMPPTRPPTP
TEDPKIYEDPEDLDKDCLHCKDLGCILTGKSCGYLKNKNTKNQIVKRIVVHNSNCF*fsi
xlknkk***nk


Translated Amino Acid sequence (All Frames)
Frame A:
YFFFYNNEMKILILSFFLILGINLVFCQSSIXLSATIYDQSPARNPDFEIPNAPNAVVXN
MVLSTLGADKTPTYCXGDNGVYYNGQFDIHSQSTFDSWFHEIEGISYAVPYELVLIESKD
EPGIYVYTSSSFFPIDGKGFDNKTLYPDEITYNGHNYHFCMKIHSSFTYH---

---kel**w*ylfn*wl*ywfwmy*ftykl**wklly*rll*sniwmftyrncklh*mfr
nrlyncspmfpsnm*qfk**plcc*cyellr*rsmyinrmr*wrmyi*vdlwirrfiiwc
crfiiwccrfii*cy*lfryyy*ffirypntntitfpstitfpn*ytn*ytnatnpssns
n*rskdl*rsrrfr*rlftl*rfrlhtnw*klwllkk*kyeksnckenccsqlqlflifn
xfkk*kiiik*

Frame B:
iffftimk*kf*yyhfs*f*e*i*yfvkvpfx*vplfmikvlhviliskyqmlqml*lxi
wf*vl*vliklqpivxximxfiimvnlifianphlipgsmklkvsvmpfhtn*f*lnrkt
nqefmyiplvlssqlmvkvliikhytqmkspimvtttifv*kfivvlpim---

---KNCSDGDICSTDGCDIGFGCINLPINCDDGNYCTKDYCDPTYGCLHIETANCTECLE
TGCITVLPCFPVTCDSLNSSHCVASAMNCSDNDPCTSTECVNGECTYEWICGSEDSSSGV
VDSSSGVVDSSSDVIDSSDIIIDSSSDIPIPTLSPSPQPSRFPTDTPTNTPMPPTRPPTP
TEDPKIYEDPEDLDKDCLHCKDLGCILTGKSCGYLKNKNTKNQIVKRIVVHNSNCF*fsi
xlknkk***nk

Frame C:
ffflq**nenfniiiflnfrnkfsilskfhxfkchyl*sksct*s*frntkcskccs*xy
gskyfrc**nsnlllxx*wxll*wsi*ys*pihi*flvp*n*ryqlcrsirisfn*ierr
trnlciyl*fflpn*w*rf***niipr*nhl*wsqlpflyens**fyls---

---rivvmvifvqlmvvilvldvliyl*tvmmeiivlkiiviqhmdvyisklqialnv*k
qvv*lfshvsq*hvtv*ivatvllvl*iaqitihvhqqnalmenvhmsgfvdqkihhlvl
*ihhlvl*ihhlmlltlqilllilhpisqyqhyhlplnhhvsqlihqlihqchqpvlqlq
lkiqrsmkiqki*ikivyivki*vay*lvkvvvt*kikirkikl*rellfttptvfnfqx
i*kiknnnki

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFK413 (AFK413Q) /CSM/AF/AFK4-A/AFK413Q.Seq.d/ 2179 0.0
CFI858 (CFI858Q) /CSM/CF/CFI8-C/CFI858Q.Seq.d/ 1253 0.0
AFM178 (AFM178Q) /CSM/AF/AFM1-D/AFM178Q.Seq.d/ 1253 0.0
AFL748 (AFL748Q) /CSM/AF/AFL7-B/AFL748Q.Seq.d/ 1253 0.0
CFA542 (CFA542Q) /CSM/CF/CFA5-B/CFA542Q.Seq.d/ 1249 0.0
CFH396 (CFH396Q) /CSM/CF/CFH3-D/CFH396Q.Seq.d/ 1247 0.0
SFE489 (SFE489Q) /CSM/SF/SFE4-D/SFE489Q.Seq.d/ 1245 0.0
CFH122 (CFH122Q) /CSM/CF/CFH1-A/CFH122Q.Seq.d/ 1245 0.0
SFJ670 (SFJ670Q) /CSM/SF/SFJ6-C/SFJ670Q.Seq.d/ 1243 0.0
AFK842 (AFK842Q) /CSM/AF/AFK8-B/AFK842Q.Seq.d/ 1241 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 36 5e-05 16
AE017338|AE017338.1 Mycoplasma mobile 163K section 2 of 3 of the complete genome. 34 4e-04 14
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 38 0.005 19
BX000480|BX000480.6 Zebrafish DNA sequence from clone DKEY-14C5 in linkage group 17. 46 0.006 6
L12018|L12018.2 Caenorhabditis elegans cosmid F22B7, complete sequence. 32 0.027 7
AC116551|AC116551.2 Dictyostelium discoideum chromosome 2 map complement(581327-427576) strain AX4, complete sequence. 32 0.031 13
BX842643|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete sequence; segment 2/4. 36 0.070 15
AL109815|AL109815.2 Plasmodium falciparum DNA *** SEQUENCING IN PROGRESS *** from MAL13P10. 50 0.088 1
AA550688|AA550688.1 1925m3 gmbPfHB3.1, G. Roman Reddy Plasmodium falciparum genomic clone 1925m, DNA sequence. 50 0.088 1
AL844509|AL844509.1 Plasmodium falciparum chromosome 13. 50 0.088 1
dna update 2004. 7.30
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q1ZXC5) RecName: Full=Protein psiC; Flags: Precursor; 313 6e-84
(Q54FD8) RecName: Full=Protein psiD; Flags: Precursor; 173 1e-41
(Q54C31) RecName: Full=Protein psiR; Flags: Precursor; 144 5e-33
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor; 143 1e-32
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor; 112 3e-23
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor; 100 2e-19
AC116984_103(AC116984|pid:none) Dictyostelium discoideum chromos... 85 6e-15
AC117072_61(AC117072|pid:none) Dictyostelium discoideum chromoso... 83 2e-14
(P11976) RecName: Full=Prestalk protein; AltName: Full=Extracell... 82 5e-14
A26838(A26838)prestalk protein precursor - slime mold (Dictyoste... 82 5e-14
protein update 2009. 4.24
PSORT

psg: 0.99 gvh: 0.68 alm: 0.38 top: 0.33 tms: 0.00 mit: 0.20 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: extracellular, including cell wall
24.0 %: cytoplasmic
12.0 %: nuclear
8.0 %: vacuolar
4.0 %: mitochondrial
4.0 %: endoplasmic reticulum

>> prediction for AFK413 is exc

5' end seq. ID AFK413F
5' end seq.
>AFK413F.Seq
TATTTTTTTTTTTACAATAATGAAATGAAAATTTTAATATTATCATTTTTCTTAATTTTA
GGAATAAATTTAGTATTTTGTCAAAGTTCCATTTNTTTAAGTGCCACTATTTATGATCAA
AGTCCTGCACGTAATCCTGATTTCGAAATACCAAATGCTCCAAATGCTGTAGTTAANAAT
ATGGTTCTAAGTACTTTAGGTGCTGATAAAACTCCAACCTATTGTTGNGGNGATAATGGN
GTTTATTATAATGGTCAATTTGATATTCATAGCCAATCCACATTTGATTCCTGGTTCCAT
GAAATTGAAGGTATCAGTTATGCCGTTCCATACGAATTAGTTTTAATTGAATCGAAAGAC
GAACCAGGAATTTATGTATATACCTCTAGTTCTTTCTTCCCAATTGATGGTAAAGGTTTT
GATAATAAAACATTATACCCAGATGAAATCACCTATAATGGTCACAACTACCATTTTTGT
ATGAAAATTCATAGTAGTTTTACCTATCATG----------
Length of 5' end seq. 511
3' end seq. ID AFK413Z
3' end seq.
>AFK413Z.Seq
----------AAAGAATTGTAGTGATGGTGATATTTGTTCAACTGATGGTTGTGATATTG
GTTTTGGATGTATTAATTTACCTATAAACTGTGATGATGGAAATTATTGTACTAAAGATT
ATTGTGATCCAACATATGGATGTTTACATATCGAAACTGCAAATTGCACTGAATGTTTAG
AAACAGGTTGTATAACTGTTCTCCCATGTTTCCCAGTAACATGTGACAGTTTAAATAGTA
GCCACTGTGTTGCTAGTGCTATGAATTGCTCAGATAACGATCCATGTACATCAACAGAAT
GCGTTAATGGAGAATGTACATATGAGTGGATTTGTGGATCAGAAGATTCATCATCTGGTG
TTGTAGATTCATCATCTGGTGTTGTAGATTCATCATCTGATGTTATTGACTCTTCAGATA
TTATTATTGATTCTTCATCCGATATCCCAATACCAACACTATCACCTTCCCCTCAACCAT
CACGTTTCCCAACTGATACACCAACTAATACACCAATGCCACCAACCCGTCCTCCAACTC
CAACTGAAGATCCAAAGATCTATGAAGATCCAGAAGATTTAGATAAAGATTGTTTACATT
GTAAAGATTTAGGTTGCATACTAACTGGTAAAAGTTGTGGTTACTTAAAAAATAAAAATA
CGAAAAATCAAATTGTAAAGAGAATTGTTGTTCACAACTCCAACTGTTTTTAATTTTCAA
TTNATTTAAAAAATAAAAAATAATAATAAAATAAA
Length of 3' end seq. 745
Connected seq. ID AFK413P
Connected seq.
>AFK413P.Seq
TATTTTTTTTTTTACAATAATGAAATGAAAATTTTAATATTATCATTTTTCTTAATTTTA
GGAATAAATTTAGTATTTTGTCAAAGTTCCATTTNTTTAAGTGCCACTATTTATGATCAA
AGTCCTGCACGTAATCCTGATTTCGAAATACCAAATGCTCCAAATGCTGTAGTTAANAAT
ATGGTTCTAAGTACTTTAGGTGCTGATAAAACTCCAACCTATTGTTGNGGNGATAATGGN
GTTTATTATAATGGTCAATTTGATATTCATAGCCAATCCACATTTGATTCCTGGTTCCAT
GAAATTGAAGGTATCAGTTATGCCGTTCCATACGAATTAGTTTTAATTGAATCGAAAGAC
GAACCAGGAATTTATGTATATACCTCTAGTTCTTTCTTCCCAATTGATGGTAAAGGTTTT
GATAATAAAACATTATACCCAGATGAAATCACCTATAATGGTCACAACTACCATTTTTGT
ATGAAAATTCATAGTAGTTTTACCTATCATG----------AAAGAATTGTAGTGATGGT
GATATTTGTTCAACTGATGGTTGTGATATTGGTTTTGGATGTATTAATTTACCTATAAAC
TGTGATGATGGAAATTATTGTACTAAAGATTATTGTGATCCAACATATGGATGTTTACAT
ATCGAAACTGCAAATTGCACTGAATGTTTAGAAACAGGTTGTATAACTGTTCTCCCATGT
TTCCCAGTAACATGTGACAGTTTAAATAGTAGCCACTGTGTTGCTAGTGCTATGAATTGC
TCAGATAACGATCCATGTACATCAACAGAATGCGTTAATGGAGAATGTACATATGAGTGG
ATTTGTGGATCAGAAGATTCATCATCTGGTGTTGTAGATTCATCATCTGGTGTTGTAGAT
TCATCATCTGATGTTATTGACTCTTCAGATATTATTATTGATTCTTCATCCGATATCCCA
ATACCAACACTATCACCTTCCCCTCAACCATCACGTTTCCCAACTGATACACCAACTAAT
ACACCAATGCCACCAACCCGTCCTCCAACTCCAACTGAAGATCCAAAGATCTATGAAGAT
CCAGAAGATTTAGATAAAGATTGTTTACATTGTAAAGATTTAGGTTGCATACTAACTGGT
AAAAGTTGTGGTTACTTAAAAAATAAAAATACGAAAAATCAAATTGTAAAGAGAATTGTT
GTTCACAACTCCAACTGTTTTTAATTTTCAATTNATTTAAAAAATAAAAAATAATAATAA
AATAAA
Length of connected seq. 1256
Full length Seq ID -
Full length Seq. -
Length of full length seq. -