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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLF671
Library SL
(Link to library)
Clone ID SLF671
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16580-1
Original site URL
Representative seq. ID SLF671Z
(Link to Original site)
Representative DNA sequence 
>SLF671 (SLF671Q) /CSM/SL/SLF6-C/SLF671Q.Seq.d/
XXXXXXXXXXAACCGCAGCATCAACTACAGGCAGAAACCCAAGAAATCCAACAAGTAGAG
CTCCAACGGTCACACCAACGCCAACCTCTTCAGCTGAAGAACCAGCTGCTGGTGGCGAAG
ATTCAAGTGCAATCTCCAAATATAGTATTCAATCATTTGGTATCTTTGTTTTATCAATGA
TAATATATTTAGTAATTTAAAATAACTAATATTCTTTATATATATATGAAAATAAAATAA
TAATAATAAAAAAAATTATAAAAATAAAAAAATAAATACAAATCTAAAATTTT
sequence update 1998. 9.10
Translated Amino Acid sequence 
---TAASTTGRNPRNPTSRAPTVTPTPTSSAEEPAAGGEDSSAISKYSIQSFGIFVLSMI
IYLVI*nn*yslyiyenkiiiikkiikikk*iqi*nf
Translated Amino Acid sequence (All Frames) 
Frame A:
---TAASTTGRNPRNPTSRAPTVTPTPTSSAEEPAAGGEDSSAISKYSIQSFGIFVLSMI
IYLVI*nn*yslyiyenkiiiikkiikikk*iqi*nf


Frame B:
---pqhqlqaetqeiqqvelqrshqrqplqlknqllvakiqvqspnivfnhlvslfyq**
yi**fkitnilyiymkik****kkl*k*knkykski


Frame C:
---rsinyrqkpkksnk*ssnghtnanlfs*rtscwwrrfkcnlqi*ysiiwylcfindn
ifsnlk*liffiyi*k*nnnnkknyknkkintnlkf
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSG715 (SSG715Q) /CSM/SS/SSG7-A/SSG715Q.Seq.d/                        361   4e-99
SLK604 (SLK604Q) /CSM/SL/SLK6-A/SLK604Q.Seq.d/                        361   4e-99
SLH864 (SLH864Q) /CSM/SL/SLH8-C/SLH864Q.Seq.d/                        361   4e-99
SLH856 (SLH856Q) /CSM/SL/SLH8-C/SLH856Q.Seq.d/                        361   4e-99
SLG873 (SLG873Q) /CSM/SL/SLG8-D/SLG873Q.Seq.d/                        361   4e-99
SLF671 (SLF671Q) /CSM/SL/SLF6-C/SLF671Q.Seq.d/                        361   4e-99
SLF348 (SLF348Q) /CSM/SL/SLF3-B/SLF348Q.Seq.d/                        361   4e-99
SLE229 (SLE229Q) /CSM/SL/SLE2-B/SLE229Q.Seq.d/                        361   4e-99
SLD436 (SLD436Q) /CSM/SL/SLD4-B/SLD436Q.Seq.d/                        361   4e-99
SLD352 (SLD352Q) /CSM/SL/SLD3-C/SLD352Q.Seq.d/                        361   4e-99
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU061433) Dictyostelium discoideum slug cDNA, clone SLE229.      335   5e-88  1
(AU053094) Dictyostelium discoideum slug cDNA, clone SLF671.      335   5e-88  1
(AU052935) Dictyostelium discoideum slug cDNA, clone SLF348.      335   5e-88  1
(AU052765) Dictyostelium discoideum slug cDNA, clone SLK604.      335   5e-88  1
(AU052509) Dictyostelium discoideum slug cDNA, clone SLD436.      335   5e-88  1
(AU052458) Dictyostelium discoideum slug cDNA, clone SLD352.      335   5e-88  1
(AU052357) Dictyostelium discoideum slug cDNA, clone SLD189.      335   5e-88  1
(AU040044) Dictyostelium discoideum slug cDNA, clone SLA310.      335   5e-88  1
(AU039974) Dictyostelium discoideum slug cDNA, clone SLG873.      335   5e-88  1
(AU039479) Dictyostelium discoideum slug cDNA, clone SLH864.      335   5e-88  1
dna update 2009. 5.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54GV8) RecName: Full=Uncharacterized transmembrane protein DDB...    74   2e-12
AC069143_9(AC069143|pid:none) Sequence of BAC T29M8 from Arabido...    32   5.2
(Q8RYC8) RecName: Full=Auxin response factor 19; AltName: Full=A...    32   5.2
CP000471_2084(CP000471|pid:none) Magnetococcus sp. MC-1, complet...    32   8.8
BC166269_1(BC166269|pid:none) Xenopus tropicalis hypothetical pr...    32   8.8
protein update 2009. 1.23
PSORT 

 psg: 0.62  gvh: 0.39  alm: 0.24  top: 0.73  tms: 0.07  mit: 0.54  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.29  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for SLF671 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLF671Z
3' end seq. 
>SLF671Z.Seq
----------AACCGCAGCATCAACTACAGGCAGAAACCCAAGAAATCCAACAAGTAGAG
CTCCAACGGTCACACCAACGCCAACCTCTTCAGCTGAAGAACCAGCTGCTGGTGGCGAAG
ATTCAAGTGCAATCTCCAAATATAGTATTCAATCATTTGGTATCTTTGTTTTATCAATGA
TAATATATTTAGTAATTTAAAATAACTAATATTCTTTATATATATATGAAAATAAAATAA
TAATAATAAAAAAAATTATAAAAATAAAAAAATAAATACAAATCTAAAATTTT
Length of 3' end seq. 283
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -