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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLF664
Library SL
(Link to library)
Clone ID SLF664
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12908-1
Original site URL
Representative seq. ID SLF664Z
(Link to Original site)
Representative DNA sequence 
>SLF664 (SLF664Q) /CSM/SL/SLF6-C/SLF664Q.Seq.d/
XXXXXXXXXXAATTCATTAATTAAAGAGATTGAAAAAGCAAATTACAATATCTTTAAAGA
TTTAAAAGATAATTATGGTGAACCAACAATTGAAAAATTAAATGAACTAAGATATAAATT
TAATGATGCAGCAAGAGAATCAAGAGAAGTTATTAAAAATAAAATTGAAAGTGCTCAAGC
TATCGAACAAGAATTAGCCAAAAATCTTAAAAAACCACATGCTGATTCAAATGGTCATCC
AAAACCATATCCACATCATCATTTATTAAATCAAGAAAATCAAATTGATGAAAATTTAAT
TATTGTTTAAAAAAAAATAA
sequence update 1998. 9.10
Translated Amino Acid sequence 
---SLIKEIEKANYNIFKDLKDNYGEPTIEKLNELRYKFNDAARESREVIKNKIESAQAI
EQELAKNLKKPHADSNGHPKPYPHHHLLNQENQIDENLIIV*kki
Translated Amino Acid sequence (All Frames) 
Frame A:
---ih*lkrlkkqitislki*kiimvnqqlkn*mn*dinlmmqqenqekllkiklkvlkl
snkn*pkilknhmliqmviqnhihiiiy*ikkiklmki*llfkkk*


Frame B:
---fin*rd*ksklqyl*rfkr*lw*tnn*kik*tki*i**cskrikrsy*k*n*kcssy
rtrisqks*kttc*fkwssktistssfiksrksn**kfnyclkkn


Frame C:
---SLIKEIEKANYNIFKDLKDNYGEPTIEKLNELRYKFNDAARESREVIKNKIESAQAI
EQELAKNLKKPHADSNGHPKPYPHHHLLNQENQIDENLIIV*kki
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLF664 (SLF664Q) /CSM/SL/SLF6-C/SLF664Q.Seq.d/                        591   e-168
CHB285 (CHB285Q) /CSM/CH/CHB2-D/CHB285Q.Seq.d/                        583   e-166
CFK221 (CFK221Q) /CSM/CF/CFK2-A/CFK221Q.Seq.d/                        575   e-163
CFF410 (CFF410Q) /CSM/CF/CFF4-A/CFF410Q.Seq.d/                        551   e-156
AFO593 (AFO593Q) /CSM/AF/AFO5-D/AFO593Q.Seq.d/                        551   e-156
AFK896 (AFK896Q) /CSM/AF/AFK8-D/AFK896Q.Seq.d/                        551   e-156
AFA358 (AFA358Q) /CSM/AF/AFA3-C/AFA358Q.Seq.d/                        537   e-152
CHD860 (CHD860Q) /CSM/CH/CHD8-C/CHD860Q.Seq.d/                        527   e-149
CFF344 (CFF344Q) /CSM/CF/CFF3-B/CFF344Q.Seq.d/                        523   e-148
SFB866 (SFB866Q) /CSM/SF/SFB8-C/SFB866Q.Seq.d/                        521   e-147
own update 2002.12.11
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AY392428) Dictyostelium discoideum DNA repair protein RAD50...   591   e-165  1
(AU053091) Dictyostelium discoideum slug cDNA, clone SLF664.      591   e-165  1
(BJ377508) Dictyostelium discoideum cDNA clone:ddc24i22, 3' ...   583   e-162  1
(BJ376075) Dictyostelium discoideum cDNA clone:ddc21i06, 3' ...   551   e-158  2
(BJ343399) Dictyostelium discoideum cDNA clone:dda22p24, 3' ...   543   e-150  2
(BJ372041) Dictyostelium discoideum cDNA clone:ddc11d04, 3' ...   543   e-150  2
(BJ346423) Dictyostelium discoideum cDNA clone:dda30i23, 3' ...   537   e-149  2
(BJ342773) Dictyostelium discoideum cDNA clone:dda1d15, 3' e...   537   e-149  1
(BJ376707) Dictyostelium discoideum cDNA clone:ddc29h16, 3' ...   527   e-146  1
(BJ372119) Dictyostelium discoideum cDNA clone:ddc11h11, 3' ...   507   e-143  2
dna update 2009. 5.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY392428_1(AY392428|pid:none) Dictyostelium discoideum DNA repai...   203   1e-51
AE014188_393(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    40   0.032
CP000094_1621(CP000094|pid:none) Pseudomonas fluorescens Pf0-1, ...    39   0.072
Z81097_17(Z81097|pid:none) Caenorhabditis elegans Cosmid K07A1, ...    37   0.21
T26205(T26205) hypothetical protein W05H9.1 - Caenorhabditis ele...    35   0.61
AE014186_404(AE014186|pid:none) Plasmodium falciparum 3D7 chromo...    35   0.80
CP000312_620(CP000312|pid:none) Clostridium perfringens SM101, c...    35   0.80
CP001357_1832(CP001357|pid:none) Brachyspira hyodysenteriae WA1,...    35   0.80
CP000721_938(CP000721|pid:none) Clostridium beijerinckii NCIMB 8...    34   1.8
(A7I1V8) RecName: Full=Protein translocase subunit secA;  &CP000...    33   2.3
protein update 2009. 6. 3
PSORT 

 psg: 0.55  gvh: 0.19  alm: 0.63  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 20.0 %: mitochondrial
	 12.0 %: cytoskeletal
	 12.0 %: cytoplasmic
	  4.0 %: vacuolar
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for SLF664 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLF664Z
3' end seq. 
>SLF664Z.Seq
----------AATTCATTAATTAAAGAGATTGAAAAAGCAAATTACAATATCTTTAAAGA
TTTAAAAGATAATTATGGTGAACCAACAATTGAAAAATTAAATGAACTAAGATATAAATT
TAATGATGCAGCAAGAGAATCAAGAGAAGTTATTAAAAATAAAATTGAAAGTGCTCAAGC
TATCGAACAAGAATTAGCCAAAAATCTTAAAAAACCACATGCTGATTCAAATGGTCATCC
AAAACCATATCCACATCATCATTTATTAAATCAAGAAAATCAAATTGATGAAAATTTAAT
TATTGTTTAAAAAAAAATAA
Length of 3' end seq. 310
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -