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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLF652
Library SL
(Link to library)
Clone ID SLF652
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16455-1
Original site URL
Representative seq. ID SLF652E
(Link to Original site)
Representative DNA sequence 
>SLF652 (SLF652Q) /CSM/SL/SLF6-C/SLF652Q.Seq.d/
GTTGCCAAAGAAGGTACTGCCGCCGTCGTCTTAAAGAATGGTGATGCCGCTATGGTCGAA
TTAACCCCATCTCGTCCAATGTGTGTTGAATCCTTCACTGAATACCCACCATTAGGTCGT
TTCGCCGTCAGAGATATGAGACAAACCGTCGCCGTCGGTGTCATCAAATCAACCGTCAAG
AAAGCCCCAGGTAAAGCCGGTGATAAGAAAGGTGCTGCTGCCCCATCAAAAAAGAAATAA
ATAAATAATATTTCTTAATAAATAGCATTTTATAATAATTTT
sequence update 1998. 9.10
Translated Amino Acid sequence 
VAKEGTAAVVLKNGDAAMVELTPSRPMCVESFTEYPPLGRFAVRDMRQTVAVGVIKSTVK
KAPGKAGDKKGAAAPSKKK*innis**iafynnf
Translated Amino Acid sequence (All Frames) 
Frame A:
VAKEGTAAVVLKNGDAAMVELTPSRPMCVESFTEYPPLGRFAVRDMRQTVAVGVIKSTVK
KAPGKAGDKKGAAAPSKKK*innis**iafynnf


Frame B:
lpkkvlppss*rmvmplwsn*phlvqcvlnpslnthh*vvspsei*dkpspsvssnqpsr
kpqvkpvirkvllphqkrnk*iiflnk*hfiii


Frame C:
cqrrycrrrlkew*crygrinpissnvc*ilh*iptirsfrrqryetnrrrrchqinrqe
spr*sr**ercccpikkeink*yflinsil**f
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSI414 (VSI414Q) /CSM/VS/VSI4-A/VSI414Q.Seq.d/                        450   e-126
VSH823 (VSH823Q) /CSM/VS/VSH8-A/VSH823Q.Seq.d/                        450   e-126
VSF761 (VSF761Q) /CSM/VS/VSF7-C/VSF761Q.Seq.d/                        450   e-126
VSE380 (VSE380Q) /CSM/VS/VSE3-D/VSE380Q.Seq.d/                        450   e-126
VSD740 (VSD740Q) /CSM/VS/VSD7-B/VSD740Q.Seq.d/                        450   e-126
VSD380 (VSD380Q) /CSM/VS/VSD3-D/VSD380Q.Seq.d/                        450   e-126
VSD312 (VSD312Q) /CSM/VS/VSD3-A/VSD312Q.Seq.d/                        450   e-126
VFO616 (VFO616Q) /CSM/VF/VFO6-A/VFO616Q.Seq.d/                        450   e-126
VFO348 (VFO348Q) /CSM/VF/VFO3-B/VFO348Q.Seq.d/                        450   e-126
VFN666 (VFN666Q) /CSM/VF/VFN6-C/VFN666Q.Seq.d/                        450   e-126
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(X55973) D. discoideum EF1-I gene for elongation factor 1 al...   450   e-122  1
(AU285051) Dictyostelium discoideum gamete cDNA clone:FCL-AC...   450   e-122  1
(AU285021) Dictyostelium discoideum gamete cDNA clone:FCL-AA...   450   e-122  1
(AU285015) Dictyostelium discoideum gamete cDNA clone:FCL-AA...   450   e-122  1
(AU284628) Dictyostelium discoideum gamete cDNA clone:FC-BF1...   450   e-122  1
(AU284420) Dictyostelium discoideum gamete cDNA clone:FC-AT2...   450   e-122  1
(AU284342) Dictyostelium discoideum gamete cDNA clone:FC-AN0...   450   e-122  1
(AU284225) Dictyostelium discoideum gamete cDNA clone:FC-AA2...   450   e-122  1
(AU268657) Dictyostelium discoideum vegetative cDNA clone:VS...   450   e-122  1
(AU268031) Dictyostelium discoideum vegetative cDNA clone:VS...   450   e-122  1
dna update 2009. 5.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X55973_1(X55973|pid:none) D. discoideum EF1-I gene for elongatio...   117   1e-25
X55972_1(X55972|pid:none) D. discoideum EF1-II gene for elongati...   117   1e-25
(P18624) RecName: Full=Elongation factor 1-alpha;          Short...   117   1e-25
I54251(I54251) translation elongation factor eEF-1 alpha - human...    88   1e-16
FN392319_1522(FN392319|pid:none) Pichia pastoris GS115 chromosom...    87   1e-16
FJ539138_1(FJ539138|pid:none) Ignatius tetrasporus strain UTEX B...    87   2e-16
A29820_1(A29820|pid:none) A.gossypi translation elongation facto...    87   2e-16
FB784609_1(FB784609|pid:none) Sequence 3882 from Patent WO200803...    87   2e-16
AY264216_1(AY264216|pid:none) Pterodoras granulosus elongation f...    86   3e-16
AF054510_1(AF054510|pid:none) Yarrowia lipolytica translation el...    86   3e-16
protein update 2009. 7. 5
PSORT 

 psg: 0.80  gvh: 0.31  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 36.0 %: nuclear
	  4.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SLF652 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SLF652E
Full length Seq. 
>SLF652E.Seq
GTTGCCAAAGAAGGTACTGCCGCCGTCGTCTTAAAGAATGGTGATGCCGCTATGGTCGAA
TTAACCCCATCTCGTCCAATGTGTGTTGAATCCTTCACTGAATACCCACCATTAGGTCGT
TTCGCCGTCAGAGATATGAGACAAACCGTCGCCGTCGGTGTCATCAAATCAACCGTCAAG
AAAGCCCCAGGTAAAGCCGGTGATAAGAAAGGTGCTGCTGCCCCATCAAAAAAGAAATAA
ATAAATAATATTTCTTAATAAATAGCATTTTATAATAATTTT
Length of full length seq. 282