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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLF627
Library SL
(Link to library)
Clone ID SLF627
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15333-1
Original site URL
Representative seq. ID SLF627Z
(Link to Original site)
Representative DNA sequence 
>SLF627 (SLF627Q) /CSM/SL/SLF6-B/SLF627Q.Seq.d/
XXXXXXXXXXAGAAGCTTAATCATCCATGGTGCTGATGAAATCGATATCGTTCGTTCAGG
TCTCGAAGATACCATGCAAAATGCTTGTGCTGAAACCAGAAAGACTGCAAATGAAAAGAA
CACTGATTACCGTTCTGCCGCTTTATACAATGCTATCATGAAGATTAAAGCTGTCTATGA
ATCATCTGGTAATGTCTTCTCTTAAATATTTTAAAAAAACCCTTTTAAGTTACGCAAAAA
AAAAAAAAAAAAAAAATCCAATACAAGTTATATTAAAATAAAATGAAAATAATAGATTTA
ATATTGT
sequence update 1998. 9.10
Translated Amino Acid sequence 
---SLIIHGADEIDIVRSGLEDTMQNACAETRKTANEKNTDYRSAALYNAIMKIKAVYES
SGNVFS*if*knpfklrkkkkkkksntsyikik*k**i*yc
Translated Amino Acid sequence (All Frames) 
Frame A:
---ea*ssmvlmksisfvqvskipckmlvlkperlqmkrtlitvlplytmls*rlklsmn
hlvmsslkyfkktllsyakkkkkknpiqvilk*nennrfni


Frame B:
---klnhpwc**nryrsfrsrryhakclc*nqkdck*keh*lpfcrfiqcyhed*scl*i
iw*clllnilkkpf*vtqkkkkkkiqykly*nkmkiidlil


Frame C:
---SLIIHGADEIDIVRSGLEDTMQNACAETRKTANEKNTDYRSAALYNAIMKIKAVYES
SGNVFS*if*knpfklrkkkkkkksntsyikik*k**i*yc
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSC567 (SSC567Q) /CSM/SS/SSC5-C/SSC567Q.Seq.d/                        404   e-112
SLI546 (SLI546Q) /CSM/SL/SLI5-B/SLI546Q.Seq.d/                        404   e-112
SLG792 (SLG792Q) /CSM/SL/SLG7-D/SLG792Q.Seq.d/                        404   e-112
SLG743 (SLG743Q) /CSM/SL/SLG7-B/SLG743Q.Seq.d/                        404   e-112
SLG578 (SLG578Q) /CSM/SL/SLG5-D/SLG578Q.Seq.d/                        404   e-112
SLF627 (SLF627Q) /CSM/SL/SLF6-B/SLF627Q.Seq.d/                        404   e-112
SLF185 (SLF185Q) /CSM/SL/SLF1-D/SLF185Q.Seq.d/                        404   e-112
SLE716 (SLE716Q) /CSM/SL/SLE7-A/SLE716Q.Seq.d/                        404   e-112
SLD173 (SLD173Q) /CSM/SL/SLD1-D/SLD173Q.Seq.d/                        404   e-112
SLA391 (SLA391Q) /CSM/SL/SLA3-D/SLA391Q.Seq.d/                        404   e-112
own update 2001. 8.27
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C91955) Dictyostelium discoideum slug cDNA, clone SSC567.        446   e-145  2
(AU053074) Dictyostelium discoideum slug cDNA, clone SLF627.      446   e-145  2
(AU053394) Dictyostelium discoideum slug cDNA, clone SLI546.      446   e-121  1
(AU052834) Dictyostelium discoideum slug cDNA, clone SLF185.      446   e-121  1
(AU052345) Dictyostelium discoideum slug cDNA, clone SLD173.      446   e-121  1
(AU040089) Dictyostelium discoideum slug cDNA, clone SLA391.      446   e-121  1
(AU039940) Dictyostelium discoideum slug cDNA, clone SLG792.      446   e-121  1
(AU039915) Dictyostelium discoideum slug cDNA, clone SLG743.      446   e-121  1
(AU039850) Dictyostelium discoideum slug cDNA, clone SLG578.      446   e-121  1
(AU039538) Dictyostelium discoideum slug cDNA, clone SLE716.      446   e-121  1
dna update 2009. 5.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54KB7) RecName: Full=Glutamate dehydrogenase, mitochondrial;  ...   127   9e-29
CP000159_2202(CP000159|pid:none) Salinibacter ruber DSM 13855, c...    49   5e-05
AF533888_1(AF533888|pid:none) Porphyra yezoensis strain TU-1 glu...    49   5e-05
AJ556996_1(AJ556996|pid:none) Oncorhynchus mykiss partial mRNA f...    48   9e-05
BT072604_1(BT072604|pid:none) Salmo salar clone ssal-rgf-532-071...    48   9e-05
CP000084_1170(CP000084|pid:none) Candidatus Pelagibacter ubique ...    48   9e-05
BX005174_8(BX005174|pid:none) Zebrafish DNA sequence from clone ...    48   9e-05
BT059207_1(BT059207|pid:none) Salmo salar clone ssal-rgf-532-192...    48   9e-05
BT044837_1(BT044837|pid:none) Salmo salar clone ssal-rgf-505-100...    48   9e-05
BC044202_1(BC044202|pid:none) Danio rerio glutamate dehydrogenas...    48   1e-04
protein update 2009. 6. 3
PSORT 

 psg: 0.75  gvh: 0.39  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for SLF627 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLF627Z
3' end seq. 
>SLF627Z.Seq
----------AGAAGCTTAATCATCCATGGTGCTGATGAAATCGATATCGTTCGTTCAGG
TCTCGAAGATACCATGCAAAATGCTTGTGCTGAAACCAGAAAGACTGCAAATGAAAAGAA
CACTGATTACCGTTCTGCCGCTTTATACAATGCTATCATGAAGATTAAAGCTGTCTATGA
ATCATCTGGTAATGTCTTCTCTTAAATATTTTAAAAAAACCCTTTTAAGTTACGCAAAAA
AAAAAAAAAAAAAAAATCCAATACAAGTTATATTAAAATAAAATGAAAATAATAGATTTA
ATATTGT
Length of 3' end seq. 297
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -