AFK408
Library AF
(Link to library)
Clone ID AFK408
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10794-1
Original site URL
Representative seq. ID AFK408Z
(Link to Original site)
Representative DNA sequence
>AFK408 (AFK408Q) /CSM/AF/AFK4-A/AFK408Q.Seq.d/
XXXXXXXXXXGAATGATGCAGTTAACATTTGGTCATTTGGTCCAGAATATAAGGGTCCAA
ATGTTTTAGTTAACAAAACCAAAGGTGTTCAATATCTTCATGAAATTAAAGACTCTATGG
TTTCAGCATTCCAATGGATCTCAAATGAAGGTGTATTATGTGGTGAGAAAATGAGATCGA
TTCGTTTCAACGTTTATGATGTAATGCTTCATGCCGATGCAATTCATAGAGGTAGTGGTC
AATTTATTCCAACAACTCGTCGTGTAATGTATGCCTCCCAACTATCAGCTCAACCAACAC
TTTTGGAACCAATGTATTTGGCTGATATTAGTACTCCTGAAAGTGGTATTAGTGGTATCT
ACTCTGTACTCAATCGTAGAAGAGGTGTTGTCATTGGTGAAGAACGTCGTATTGGTACTC
CATTATTCAATATCAAAGCTTATCTTCCTGTAATGGAATCATTTGGTCTCACTGCTGATT
TACGTTCAAGTACTGCTGGTCAAGCTTTCCCTCAATGTGTTTTTGATCATTGGAGTTCAA
TTGGTATCGTGGTCAAGATAAAAGATCAACTGAAGTAGCTTCATCAATTAGAAAGAGAAA
AGGTTTAATCCAAAATACCAACTCTT
sequence update 2001. 6. 1
Translated Amino Acid sequence
---NDAVNIWSFGPEYKGPNVLVNKTKGVQYLHEIKDSMVSAFQWISNEGVLCGEKMRSI
RFNVYDVMLHADAIHRGSGQFIPTTRRVMYASQLSAQPTLLEPMYLADISTPESGISGIY
SVLNRRRGVVIGEERRIGTPLFNIKAYLPVMESFGLTADLRSSTAGQAFPQCVFDHWSSI
GIVVKIKDQLK*lhqlerekv*skiptl


Translated Amino Acid sequence (All Frames)
Frame A:
---NDAVNIWSFGPEYKGPNVLVNKTKGVQYLHEIKDSMVSAFQWISNEGVLCGEKMRSI
RFNVYDVMLHADAIHRGSGQFIPTTRRVMYASQLSAQPTLLEPMYLADISTPESGISGIY
SVLNRRRGVVIGEERRIGTPLFNIKAYLPVMESFGLTADLRSSTAGQAFPQCVFDHWSSI
GIVVKIKDQLK*lhqlerekv*skiptl


Frame B:
---mmqltfghlvqnirvqmf*ltkpkvfnifmklktlwfqhsngsqmkvyyvvrk*drf
vstfmm*cfmpmqfievvvnlfqqlvv*cmppnyqlnqhfwnqciwlilvllkvvlvvst
lysiveevlslvknvvlvlhysisklifl*wnhlvslliyvqvllvklslnvfliigvql
vswsr*kin*ssfin*kekrfnpkyql


Frame C:
---*cs*hlviwsri*gskcfs*qnqrcsiss*n*rlygfsipmdlk*rcimw*eneids
fqrl*cnascrcns*r*wsiysnnsscnvclptisstntfgtnvfg*y*ys*kwy*wyll
ctqs*krcchw*rtsywysiiqyqslsscngiiwshc*ftfkycwssfpsmcf*slefnw
yrgqdkrstevassirkrkgliqntns


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFK408 (AFK408Q) /CSM/AF/AFK4-A/AFK408Q.Seq.d/ 1221 0.0
VHL349 (VHL349Q) /CSM/VH/VHL3-C/VHL349Q.Seq.d/ 1189 0.0
VHN228 (VHN228Q) /CSM/VH/VHN2-B/VHN228Q.Seq.d/ 1185 0.0
VHM784 (VHM784Q) /CSM/VH/VHM7-D/VHM784Q.Seq.d/ 1185 0.0
VHL675 (VHL675Q) /CSM/VH/VHL6-D/VHL675Q.Seq.d/ 1185 0.0
VHN538 (VHN538Q) /CSM/VH/VHN5-B/VHN538Q.Seq.d/ 1183 0.0
SHC855 (SHC855Q) /CSM/SH/SHC8-C/SHC855Q.Seq.d/ 1183 0.0
VHD689 (VHD689Q) /CSM/VH/VHD6-D/VHD689Q.Seq.d/ 1179 0.0
SHC476 (SHC476Q) /CSM/SH/SHC4-D/SHC476Q.Seq.d/ 1174 0.0
CHE836 (CHE836Q) /CSM/CH/CHE8-B/CHE836Q.Seq.d/ 1172 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

M26017|M26017.1 D.discoideum elongation factor 2 mRNA, complete cds. 92 4e-41 7
BI863585|BI863585.1 kx46a06.y1 Parastrongyloides trichosuri FL pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to SW:EF2_CAEEL P29691 ELONGATION FACTOR 2 ;, mRNA sequence. 66 2e-21 4
BI863575|BI863575.1 kx45h07.y1 Parastrongyloides trichosuri FL pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to SW:EF2_CHICK Q90705 ELONGATION FACTOR 2 ;, mRNA sequence. 66 6e-18 3
BI451383|BI451383.1 kx23e09.y1 Parastrongyloides trichosuri FL pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to SW:EF2_CAEEL P29691 ELONGATION FACTOR 2 ;, mRNA sequence. 66 6e-18 3
BM056853|BM056853.1 2154-85 hindgut and Malpighian tubule subtracted cDNA library Ctenocephalides felis cDNA clone 2154-85, mRNA sequence. 92 1e-14 1
BM058578|BM058578.1 2193-94 hindgut and Malpighian tubule subtracted cDNA library Ctenocephalides felis cDNA clone 2193-94, mRNA sequence. 90 5e-14 1
BM058379|BM058379.1 2191-29 hindgut and Malpighian tubule subtracted cDNA library Ctenocephalides felis cDNA clone 2191-29, mRNA sequence. 90 5e-14 1
X92797|X92797.1 E.histolytica partial mRNA; expressed sequence tag (clone HMZP0097). 46 1e-13 4
BM897769|BM897769.1 ph38h03.y1 Ostertagia ostertagi L4 pAMP1 v1 Ostertagia ostertagi cDNA 5' similar to SW:EF2_CAEEL P29691 ELONGATION FACTOR 2 ;, mRNA sequence. 76 9e-12 2
BI502325|BI502325.1 kt88b08.y1 Strongyloides ratti L2 pAMP1 v1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to SW:EF2_CAEEL P29691 ELONGATION FACTOR 2 ;, mRNA sequence. 44 5e-11 3
dna update 2004. 7.30
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AY069933_1(AY069933|pid:none) Rana sylvatica eukaryotic translat... 231 9e-60
BC089730_1(BC089730|pid:none) Xenopus tropicalis MGC108369 prote... 230 3e-59
DQ630927_1(DQ630927|pid:none) Gryllus pennsylvanicus elongation ... 230 3e-59
DQ630926_1(DQ630926|pid:none) Gryllus veletis elongation factor ... 230 3e-59
DQ630924_1(DQ630924|pid:none) Gryllus rubens elongation factor m... 230 3e-59
A40411(A40411) translation elongation factor eEF-2 - Caenorhabdi... 229 4e-59
BT071866_1(BT071866|pid:none) Salmo salar clone ssal-rgf-501-088... 229 5e-59
BT059038_1(BT059038|pid:none) Salmo salar clone ssal-rgf-521-328... 229 5e-59
AY391422_1(AY391422|pid:none) Danio rerio eukaryotic translation... 228 8e-59
BC063919_1(BC063919|pid:none) Xenopus tropicalis eukaryotic tran... 228 8e-59
protein update 2009. 4.24
PSORT

psg: 0.75 gvh: 0.38 alm: 0.45 top: 0.53 tms: 0.00 mit: 0.20 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: cytoplasmic
36.0 %: nuclear
24.0 %: cytoskeletal
4.0 %: mitochondrial

>> prediction for AFK408 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFK408Z
3' end seq.
>AFK408Z.Seq
----------GAATGATGCAGTTAACATTTGGTCATTTGGTCCAGAATATAAGGGTCCAA
ATGTTTTAGTTAACAAAACCAAAGGTGTTCAATATCTTCATGAAATTAAAGACTCTATGG
TTTCAGCATTCCAATGGATCTCAAATGAAGGTGTATTATGTGGTGAGAAAATGAGATCGA
TTCGTTTCAACGTTTATGATGTAATGCTTCATGCCGATGCAATTCATAGAGGTAGTGGTC
AATTTATTCCAACAACTCGTCGTGTAATGTATGCCTCCCAACTATCAGCTCAACCAACAC
TTTTGGAACCAATGTATTTGGCTGATATTAGTACTCCTGAAAGTGGTATTAGTGGTATCT
ACTCTGTACTCAATCGTAGAAGAGGTGTTGTCATTGGTGAAGAACGTCGTATTGGTACTC
CATTATTCAATATCAAAGCTTATCTTCCTGTAATGGAATCATTTGGTCTCACTGCTGATT
TACGTTCAAGTACTGCTGGTCAAGCTTTCCCTCAATGTGTTTTTGATCATTGGAGTTCAA
TTGGTATCGTGGTCAAGATAAAAGATCAACTGAAGTAGCTTCATCAATTAGAAAGAGAAA
AGGTTTAATCCAAAATACCAACTCTT
Length of 3' end seq. 616
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -