NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLF529
Library SL
(Link to library)
Clone ID SLF529
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16455-1
Original site URL
Representative seq. ID SLF529Z
(Link to Original site)
Representative DNA sequence 
>SLF529 (SLF529Q) /CSM/SL/SLF5-B/SLF529Q.Seq.d/
XXXXXXXXXXACCCACCATTAGGTCGTTTCGCCGTCAGAGATATGAGACAAACCGTCGCC
GTCGGTGTCATCAAATCAACCGTCAAGAAAGCCCCAGGTAAAGCCGGTGATAAGAAAGGT
GCTGCTGCCCCATCAAAAAAGAAATAAATAAATAATATTTCTTAATAAATAGCATTTTAT
AATAATTTTAAAA
sequence update 1998. 9.10
Translated Amino Acid sequence 
---PPLGRFAVRDMRQTVAVGVIKSTVKKAPGKAGDKKGAAAPSKKK*innis**iafyn
nfk
Translated Amino Acid sequence (All Frames) 
Frame A:
---ptirsfrrqryetnrrrrchqinrqespr*sr**ercccpikkeink*yflinsil*
*f*


Frame B:
---PPLGRFAVRDMRQTVAVGVIKSTVKKAPGKAGDKKGAAAPSKKK*innis**iafyn
nfk


Frame C:
---hh*vvspsei*dkpspsvssnqpsrkpqvkpvirkvllphqkrnk*iiflnk*hfii
ilk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSI414 (VSI414Q) /CSM/VS/VSI4-A/VSI414Q.Seq.d/                        242   2e-63
VSH823 (VSH823Q) /CSM/VS/VSH8-A/VSH823Q.Seq.d/                        242   2e-63
VSF761 (VSF761Q) /CSM/VS/VSF7-C/VSF761Q.Seq.d/                        242   2e-63
VSE380 (VSE380Q) /CSM/VS/VSE3-D/VSE380Q.Seq.d/                        242   2e-63
VSD740 (VSD740Q) /CSM/VS/VSD7-B/VSD740Q.Seq.d/                        242   2e-63
VSD380 (VSD380Q) /CSM/VS/VSD3-D/VSD380Q.Seq.d/                        242   2e-63
VSD312 (VSD312Q) /CSM/VS/VSD3-A/VSD312Q.Seq.d/                        242   2e-63
VFO616 (VFO616Q) /CSM/VF/VFO6-A/VFO616Q.Seq.d/                        242   2e-63
VFO348 (VFO348Q) /CSM/VF/VFO3-B/VFO348Q.Seq.d/                        242   2e-63
VFN666 (VFN666Q) /CSM/VF/VFN6-C/VFN666Q.Seq.d/                        242   2e-63
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(X55973) D. discoideum EF1-I gene for elongation factor 1 al...   246   2e-61  1
(AU285051) Dictyostelium discoideum gamete cDNA clone:FCL-AC...   246   2e-61  1
(AU285021) Dictyostelium discoideum gamete cDNA clone:FCL-AA...   246   2e-61  1
(AU285015) Dictyostelium discoideum gamete cDNA clone:FCL-AA...   246   2e-61  1
(AU284890) Dictyostelium discoideum gamete cDNA clone:FC-BO1...   246   2e-61  1
(AU284628) Dictyostelium discoideum gamete cDNA clone:FC-BF1...   246   2e-61  1
(AU284420) Dictyostelium discoideum gamete cDNA clone:FC-AT2...   246   2e-61  1
(AU284396) Dictyostelium discoideum gamete cDNA clone:FC-AR2...   246   2e-61  1
(AU284342) Dictyostelium discoideum gamete cDNA clone:FC-AN0...   246   2e-61  1
(AU284225) Dictyostelium discoideum gamete cDNA clone:FC-AA2...   246   2e-61  1
dna update 2009. 5. 9
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X55973_1(X55973|pid:none) D. discoideum EF1-I gene for elongatio...    50   2e-05
X55972_1(X55972|pid:none) D. discoideum EF1-II gene for elongati...    50   2e-05
(P18624) RecName: Full=Elongation factor 1-alpha;          Short...    50   2e-05
AF091355_1(AF091355|pid:none) Blastocystis hominis isolate C elo...    50   3e-05
(P54959) RecName: Full=Elongation factor 1-alpha;          Short...    50   3e-05
(P27634) RecName: Full=Elongation factor 1-alpha;          Short...    48   9e-05
A29820_1(A29820|pid:none) A.gossypi translation elongation facto...    48   9e-05
FN392319_1522(FN392319|pid:none) Pichia pastoris GS115 chromosom...    48   9e-05
FB784609_1(FB784609|pid:none) Sequence 3882 from Patent WO200803...    48   9e-05
(P40911) RecName: Full=Elongation factor 1-alpha;          Short...    48   1e-04
protein update 2009. 6. 3
PSORT 

 psg: 0.71  gvh: 0.25  alm: 0.53  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 68.0 %: nuclear
	 28.0 %: cytoplasmic
	  4.0 %: peroxisomal

>> prediction for SLF529 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLF529Z
3' end seq. 
>SLF529Z.Seq
----------ACCCACCATTAGGTCGTTTCGCCGTCAGAGATATGAGACAAACCGTCGCC
GTCGGTGTCATCAAATCAACCGTCAAGAAAGCCCCAGGTAAAGCCGGTGATAAGAAAGGT
GCTGCTGCCCCATCAAAAAAGAAATAAATAAATAATATTTCTTAATAAATAGCATTTTAT
AATAATTTTAAAA
Length of 3' end seq. 183
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -