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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLF507
Library SL
(Link to library)
Clone ID SLF507
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U16222-1
Original site URL
Representative seq. ID SLF507Z
(Link to Original site)
Representative DNA sequence 
>SLF507 (SLF507Q) /CSM/SL/SLF5-A/SLF507Q.Seq.d/
XXXXXXXXXXTATTCCACCACCATTCATTCCAAATGTTAAAGGTTCTGCTGATACCTCTA
AAATTGATCCAGTTTTCACTGATGAAGCTCCTTCTTTAACTATGGCTGGTGAATGTGCTT
TAAATCCGCAACAACAAAAAGATTTTGAAGGATTTACATATGTCGCTGAATCTGAACATT
TAAGATAAATTTAATAAATGATTTTAAAATAATAAAA
sequence update 1998. 9.10
Translated Amino Acid sequence 
---IPPPFIPNVKGSADTSKIDPVFTDEAPSLTMAGECALNPQQQKDFEGFTYVAESEHL
R*i**milk**
Translated Amino Acid sequence (All Frames) 
Frame A:
---IPPPFIPNVKGSADTSKIDPVFTDEAPSLTMAGECALNPQQQKDFEGFTYVAESEHL
R*i**milk**


Frame B:
---fhhhsfqmlkvlliplkliqfslmklll*lwlvnvl*irnnkkilkdlhmslnlni*
dkfnk*f*nnk


Frame C:
---sttihskc*rfc*yl*n*ssfh**ssffnygw*mcfksattkrf*riyicr*i*tfk
inlindfkiik
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLF507 (SLF507Q) /CSM/SL/SLF5-A/SLF507Q.Seq.d/                        410   e-114
SSK620 (SSK620Q) /CSM/SS/SSK6-A/SSK620Q.Seq.d/                        236   1e-61
VFO624 (VFO624Q) /CSM/VF/VFO6-A/VFO624Q.Seq.d/                         40   0.013
VFK237 (VFK237Q) /CSM/VF/VFK2-B/VFK237Q.Seq.d/                         40   0.013
VFJ888 (VFJ888Q) /CSM/VF/VFJ8-D/VFJ888Q.Seq.d/                         40   0.013
VFF488 (VFF488Q) /CSM/VF/VFF4-D/VFF488Q.Seq.d/                         40   0.013
SSM872 (SSM872Q) /CSM/SS/SSM8-C/SSM872Q.Seq.d/                         40   0.013
SSM433 (SSM433Q) /CSM/SS/SSM4-B/SSM433Q.Seq.d/                         40   0.013
SSH304 (SSH304Q) /CSM/SS/SSH3-A/SSH304Q.Seq.d/                         40   0.013
SSE740 (SSE740Q) /CSM/SS/SSE7-B/SSE740Q.Seq.d/                         40   0.013
own update 2001.11.27
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU053009) Dictyostelium discoideum slug cDNA, clone SLF507.      410   e-111  1
(AX771572) Sequence 285 from Patent WO03004646.                   345   4e-91  1
(U15210) Dictyostelium discoideum rac-alpha serine/threonine...   345   4e-91  1
(AU074406) Dictyostelium discoideum slug cDNA, clone SSK620.      244   1e-60  1
(AM463647) Vitis vinifera contig VV78X107456.10, whole genom...    40   0.054  3
(AY484461) Dictyostelium discoideum kinesin family member 6 ...    34   0.071  3
(CU633203) M.truncatula DNA sequence from clone MTE1-29P1 on...    48   0.13   1
(CU012060) M.truncatula DNA sequence from clone MTH2-62K13 o...    48   0.13   1
(AC147774) Medicago truncatula chromosome 2 BAC clone mth2-1...    48   0.13   1
(AC146549) Medicago truncatula clone mth2-7p18, complete seq...    48   0.13   1
dna update 2009. 5. 9
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FN392321_915(FN392321|pid:none) Pichia pastoris GS115 chromosome...    52   8e-06
A38578(A38578) protein kinase 2 (EC 2.7.1.-) - slime mold (Dicty...    50   3e-05
(P87253) RecName: Full=Protein kinase C-like;          EC=2.7.11...    49   7e-05
CP000497_359(CP000497|pid:none) Pichia stipitis CBS 6054 chromos...    49   7e-05
AM920436_709(AM920436|pid:none) Penicillium chrysogenum Wisconsi...    49   7e-05
CU633872_33(CU633872|pid:none) Podospora anserina genomic DNA ch...    49   7e-05
Y12002_1(Y12002|pid:none) N.crassa DNA for protein kinase C homo...    49   7e-05
CR382136_287(CR382136|pid:none) Debaryomyces hansenii strain CBS...    49   7e-05
BX511120_8(BX511120|pid:none) Zebrafish DNA sequence from clone ...    48   9e-05
(Q00078) RecName: Full=Protein kinase C-like;          EC=2.7.11...    48   1e-04
protein update 2009. 6. 3
PSORT 

 psg: 0.65  gvh: 0.37  alm: 0.51  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 28.0 %: nuclear
	 24.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for SLF507 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLF507Z
3' end seq. 
>SLF507Z.Seq
----------TATTCCACCACCATTCATTCCAAATGTTAAAGGTTCTGCTGATACCTCTA
AAATTGATCCAGTTTTCACTGATGAAGCTCCTTCTTTAACTATGGCTGGTGAATGTGCTT
TAAATCCGCAACAACAAAAAGATTTTGAAGGATTTACATATGTCGCTGAATCTGAACATT
TAAGATAAATTTAATAAATGATTTTAAAATAATAAAA
Length of 3' end seq. 207
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -