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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLF353
Library SL
(Link to library)
Clone ID SLF353
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16272-1
Original site URL
Representative seq. ID SLF353Z
(Link to Original site)
Representative DNA sequence 
>SLF353 (SLF353Q) /CSM/SL/SLF3-C/SLF353Q.Seq.d/
XXXXXXXXXXGTGTCATTAAAAGATGGGGTGTCCGTAAATTACCAAGAAAGACCCATAAA
GGTTTAAGAAAGGTTGCCTGTATTGGTGCATGGCATCCATCCCGTGTTAGTACCACCGTC
CCAAGAGCTGGTCAACTCGGTTACCATCATCGTGTCGAAAGAAACAAGAAGATTTACAGA
ATCGGTCAAGCTCAACCAGAAGACGGTAAACAAATCTCAACCGGTAAGACTGAATTCGAT
TTAACTGAAAAGACTATCAATCCAATGGGTGGTTTCGCTCACTACGGTATGGTTAAACAT
GAATTCTTAATGCTTAAAGGTTGTGTTGCTGGTCCAAGAAAGAGAGCCTTAACCTTAAGA
AAGAGTATCACCACTCAAACTGGTCGTGCTGCCCTCGAGAAAATCACTCTCAAATTCATC
GATACCTCCAGCAAGTTTGGTCACGGTCTTCATCAAACCGCTGAAGATAAGACTTAAATA
TTTCGGCGTCAAGAAATCAAGATCAACTAAGGCTTAAATTCAATAAATTAGATTTCAGAG
AGTTATCAAACATAA
sequence update 1998. 9.10
Translated Amino Acid sequence 
---VIKRWGVRKLPRKTHKGLRKVACIGAWHPSRVSTTVPRAGQLGYHHRVERNKKIYRI
GQAQPEDGKQISTGKTEFDLTEKTINPMGGFAHYGMVKHEFLMLKGCVAGPRKRALTLRK
SITTQTGRAALEKITLKFIDTSSKFGHGLHQTAEDKT*ifrrqeikin*glnsin*ises
yqt*
Translated Amino Acid sequence (All Frames) 
Frame A:
---ch*kmgcp*itkkdp*rfkkgclywcmasipc*yhrpkswstrlpsscrkkqedlqn
rssstrrr*tnlnr*d*irfn*kdyqsngwfrslryg*t*ilna*rlccwskkeslnlkk
eyhhsnwsccprenhsqihrylqqvwsrsssnr*r*dlnisasrnqdqlrlkfnkldfre
lsni


Frame B:
---VIKRWGVRKLPRKTHKGLRKVACIGAWHPSRVSTTVPRAGQLGYHHRVERNKKIYRI
GQAQPEDGKQISTGKTEFDLTEKTINPMGGFAHYGMVKHEFLMLKGCVAGPRKRALTLRK
SITTQTGRAALEKITLKFIDTSSKFGHGLHQTAEDKT*ifrrqeikin*glnsin*ises
yqt*


Frame C:
---slkdgvsvnyqerpikv*erlpvlvhgihpvlvppsqelvnsvtiivsketrrftes
vklnqktvnksqpvrlnsi*lkrlsiqwvvslttvwlnmns*clkvvllvqerep*p*er
vsplklvvlpsrkslsnssippaslvtvfikplkirlkyfgvkksrstka*iq*irfqrv
ikh
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLF353 (SLF353Q) /CSM/SL/SLF3-C/SLF353Q.Seq.d/                       1080   0.0
VFI645 (VFI645Q) /CSM/VF/VFI6-B/VFI645Q.Seq.d/                       1065   0.0
VFF813 (VFF813Q) /CSM/VF/VFF8-A/VFF813Q.Seq.d/                       1065   0.0
SLI226 (SLI226Q) /CSM/SL/SLI2-B/SLI226Q.Seq.d/                       1065   0.0
SLH858 (SLH858Q) /CSM/SL/SLH8-C/SLH858Q.Seq.d/                       1065   0.0
SLH735 (SLH735Q) /CSM/SL/SLH7-B/SLH735Q.Seq.d/                       1065   0.0
SLH604 (SLH604Q) /CSM/SL/SLH6-A/SLH604Q.Seq.d/                       1065   0.0
SLH567 (SLH567Q) /CSM/SL/SLH5-C/SLH567Q.Seq.d/                       1065   0.0
SLH525 (SLH525Q) /CSM/SL/SLH5-B/SLH525Q.Seq.d/                       1065   0.0
SLH448 (SLH448Q) /CSM/SL/SLH4-B/SLH448Q.Seq.d/                       1065   0.0
own update 2001.11.27
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU052939) Dictyostelium discoideum slug cDNA, clone SLF353.     1078   0.0    1
(AU039476) Dictyostelium discoideum slug cDNA, clone SLH858.      918   0.0    2
(BJ432325) Dictyostelium discoideum cDNA clone:ddv18i12, 3' ...   918   0.0    2
(AU040016) Dictyostelium discoideum slug cDNA, clone SLH448.      918   0.0    2
(AU040010) Dictyostelium discoideum slug cDNA, clone SLH434.      918   0.0    2
(AU034183) Dictyostelium discoideum slug cDNA, clone SLC231.      918   0.0    2
(AU034186) Dictyostelium discoideum slug cDNA, clone SLC234.      918   0.0    2
(AU039914) Dictyostelium discoideum slug cDNA, clone SLG735.      918   0.0    2
(AU039555) Dictyostelium discoideum slug cDNA, clone SLE743.      918   0.0    2
(AU033990) Dictyostelium discoideum slug cDNA, clone SLB704.      918   0.0    2
dna update 2009. 5. 7
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P34113) RecName: Full=60S ribosomal protein L3;  &JC4254(JC4254...   318   2e-88
BT070643_1(BT070643|pid:none) Picea sitchensis clone WS02742_A15...   219   3e-56
EU999182_1(EU999182|pid:none) Artemia franciscana ribosomal prot...   218   8e-56
AM048985_1(AM048985|pid:none) Micromalthus debilis partial mRNA ...   218   8e-56
EF070522_1(EF070522|pid:none) Maconellicoccus hirsutus clone WHM...   216   3e-55
AY395739_1(AY395739|pid:none) Nicotiana tabacum ribosomal protei...   216   3e-55
BT034517_1(BT034517|pid:none) Zea mays full-length cDNA clone ZM...   215   5e-55
BT036034_1(BT036034|pid:none) Zea mays full-length cDNA clone ZM...   215   5e-55
BC158279_1(BC158279|pid:none) Xenopus tropicalis hypothetical pr...   215   5e-55
DQ241849_1(DQ241849|pid:none) Solanum tuberosum clone 187E04 rib...   214   9e-55
protein update 2009. 6. 3
PSORT 

 psg: 0.46  gvh: 0.43  alm: 0.51  top: 0.53  tms: 0.00  mit: 0.62  mip: 0.10
 nuc: 0.21  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: mitochondrial
	 24.0 %: cytoplasmic
	 12.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: endoplasmic reticulum

>> prediction for SLF353 is mit
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLF353Z
3' end seq. 
>SLF353Z.Seq
----------GTGTCATTAAAAGATGGGGTGTCCGTAAATTACCAAGAAAGACCCATAAA
GGTTTAAGAAAGGTTGCCTGTATTGGTGCATGGCATCCATCCCGTGTTAGTACCACCGTC
CCAAGAGCTGGTCAACTCGGTTACCATCATCGTGTCGAAAGAAACAAGAAGATTTACAGA
ATCGGTCAAGCTCAACCAGAAGACGGTAAACAAATCTCAACCGGTAAGACTGAATTCGAT
TTAACTGAAAAGACTATCAATCCAATGGGTGGTTTCGCTCACTACGGTATGGTTAAACAT
GAATTCTTAATGCTTAAAGGTTGTGTTGCTGGTCCAAGAAAGAGAGCCTTAACCTTAAGA
AAGAGTATCACCACTCAAACTGGTCGTGCTGCCCTCGAGAAAATCACTCTCAAATTCATC
GATACCTCCAGCAAGTTTGGTCACGGTCTTCATCAAACCGCTGAAGATAAGACTTAAATA
TTTCGGCGTCAAGAAATCAAGATCAACTAAGGCTTAAATTCAATAAATTAGATTTCAGAG
AGTTATCAAACATAA
Length of 3' end seq. 545
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -