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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLF266
Library SL
(Link to library)
Clone ID SLF266
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16509-1
Original site URL
Representative seq. ID SLF266P
(Link to Original site)
Representative DNA sequence 
>SLF266 (SLF266Q) /CSM/SL/SLF2-C/SLF266Q.Seq.d/
AAAAAAAAAAAAANAAATAAAAAAAAATTTAATAACGTTTTAAAATGGTATAGTTTTAAT
AAAAAAAAAAAAAAAACCACTATCATTAGTAGTAAAAAAAAAATAAAAAATAAAAAAAAA
AAAANTAAAAAAAAATAATAATAAGCTATACCATGGGACTTAGAGAAAATAAAAAAGTTT
AAAAAAAAAATAAAAAATAATAAAAAATAAAAAAAAAATAAAAAAAAXXXXXXXXXXAAA
AAAAAAAAAAAGAAAAAAAAAAAAATATTAAAATATTTTTTTTAAAATCAATTTTAAATA
TAAATAATAATGTTTTTTTTTTTTTTATAAAAAAAAGAAAGAAAAAAAGAAAAAAAAAAA
AAAAAGAAAAAAAGAATTTAAAAAAAAAAAAAAAAATAGAAAAAAAAAAGTTAAAGATGT
AATGGTAAAACCAAAGTAGAATGGAAATCCAAAAAAAGATCTTTATAAATTGCCACTATA
ATCAATGTATAGATATTGTTCCGTCTGTGTGTATGCTGTTAGGTCCAGTTTGCTCTTTAG
TTACTTTAATTTAAACTATAGATCAATTTCAATATGTAATAATTTTTTTAAAAAAAAAAA
CAAAAAAAAACAAAAAGGTAATAATAATA
sequence update 1999. 2.12
Translated Amino Acid sequence 
kkkkxikknlitf*ngivlikkkkkplslvvkkk*kikkkkxkknnnklyhgt*rk*ksl
kkk*KIIKNKKKIKK---

---KKKKEKKKNIKIFFLKSILNINNNVFFFFIKKRKKKRKKKKKEKKNLKKKKKIEKKK
LKM*w*nqsrmeiqkkifinchynqcidivpsvcmllgpvcslvtli*tidqfqyviifl
kkktkknkkviii
Translated Amino Acid sequence (All Frames) 
Frame A:
kkkkxnkkkfnnvlkwysfnkkkkkttiisskkkiknkkkkxkkk***aipwdlekikkf
kkkiknnkk*kknkk---

---kkkkkkkkkilkyff*nqf*i*iimffffl*kkerkkekkkkkkkri*kkkkk*kkk
s*rcngktkvewkskkrsl*iatiinv*ilfrlcvcc*vqfal*ll*fkl*infnm**ff
*kkkqkktkr***

Frame B:
kkkkxikknlitf*ngivlikkkkkplslvvkkk*kikkkkxkknnnklyhgt*rk*ksl
kkk*KIIKNKKKIKK---

---kkkkrkkkky*niffkinfkyk**cffffykkkkekkkkkkkrkkefkkkkknrkkk
vkdvmvkpk*ngnpkkdlyklpl*smyrycsvcvyavrssllfsyfnlnyrsisicnnff
kkknkkkqkgnnn

Frame C:
kkkxk*kki**rfkmv*f**kkkknhyh***kknkk*kkkx*kkiiisytmglrenkkv*
kknkk**kikkk*kk---

---KKKKEKKKNIKIFFLKSILNINNNVFFFFIKKRKKKRKKKKKEKKNLKKKKKIEKKK
LKM*w*nqsrmeiqkkifinchynqcidivpsvcmllgpvcslvtli*tidqfqyviifl
kkktkknkkviii
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLF266 (SLF266Q) /CSM/SL/SLF2-C/SLF266Q.Seq.d/                        315   4e-85
SSM852 (SSM852Q) /CSM/SS/SSM8-C/SSM852Q.Seq.d/                        248   9e-65
SSM834 (SSM834Q) /CSM/SS/SSM8-B/SSM834Q.Seq.d/                        248   9e-65
SSM790 (SSM790Q) /CSM/SS/SSM7-D/SSM790Q.Seq.d/                        248   9e-65
SSM712 (SSM712Q) /CSM/SS/SSM7-A/SSM712Q.Seq.d/                        248   9e-65
SSM626 (SSM626Q) /CSM/SS/SSM6-B/SSM626Q.Seq.d/                        248   9e-65
SSM515 (SSM515Q) /CSM/SS/SSM5-A/SSM515Q.Seq.d/                        248   9e-65
SSM501 (SSM501Q) /CSM/SS/SSM5-A/SSM501Q.Seq.d/                        248   9e-65
SSM491 (SSM491Q) /CSM/SS/SSM4-D/SSM491Q.Seq.d/                        248   9e-65
SSM425 (SSM425Q) /CSM/SS/SSM4-B/SSM425Q.Seq.d/                        248   9e-65
own update 2001. 8.27
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU052884) Dictyostelium discoideum slug cDNA, clone SLF266.      262   8e-84  2
(D16417) Dictyostelium discoideum mRNA.                           194   2e-72  3
(AU038059) Dictyostelium discoideum slug cDNA, clone SSH216.      194   1e-63  2
(C90981) Dictyostelium discoideum slug cDNA, clone SSJ378.        194   1e-63  2
(AU038972) Dictyostelium discoideum slug cDNA, clone SSM222.      194   1e-63  2
(AU037467) Dictyostelium discoideum slug cDNA, clone SSD672.      194   1e-63  2
(AU037842) Dictyostelium discoideum slug cDNA, clone SSE360.      194   1e-63  2
(AU038060) Dictyostelium discoideum slug cDNA, clone SSH217.      194   1e-63  2
(AU039054) Dictyostelium discoideum slug cDNA, clone SSM326.      194   1e-63  2
(C90235) Dictyostelium discoideum slug cDNA, clone SSI439.        194   1e-63  2
dna update 2009. 5. 4
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 368,554,544
protein update 2009. 6. 3
PSORT 

 psg: 0.03  gvh: 0.22  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.09
 nuc: 1.90  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 76.0 %: nuclear
	 12.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for SLF266 is nuc
5' end seq. ID SLF266F
5' end seq. 
>SLF266F.Seq
AAAAAAAAAAAAANAAATAAAAAAAAATTTAATAACGTTTTAAAATGGTATAGTTTTAAT
AAAAAAAAAAAAAAAACCACTATCATTAGTAGTAAAAAAAAAATAAAAAATAAAAAAAAA
AAAANTAAAAAAAAATAATAATAAGCTATACCATGGGACTTAGAGAAAATAAAAAAGTTT
AAAAAAAAAATAAAAAATAATAAAAAATAAAAAAAAAATAAAAAAAA----------
Length of 5' end seq. 227
3' end seq. ID SLF266Z
3' end seq. 
>SLF266Z.Seq
----------AAAAAAAAAAAAAAGAAAAAAAAAAAAATATTAAAATATTTTTTTTAAAA
TCAATTTTAAATATAAATAATAATGTTTTTTTTTTTTTTATAAAAAAAAGAAAGAAAAAA
AGAAAAAAAAAAAAAAAAGAAAAAAAGAATTTAAAAAAAAAAAAAAAAATAGAAAAAAAA
AAGTTAAAGATGTAATGGTAAAACCAAAGTAGAATGGAAATCCAAAAAAAGATCTTTATA
AATTGCCACTATAATCAATGTATAGATATTGTTCCGTCTGTGTGTATGCTGTTAGGTCCA
GTTTGCTCTTTAGTTACTTTAATTTAAACTATAGATCAATTTCAATATGTAATAATTTTT
TTAAAAAAAAAAACAAAAAAAAACAAAAAGGTAATAATAATA
Length of 3' end seq. 392
Connected seq. ID SLF266P
Connected seq. 
>SLF266P.Seq
AAAAAAAAAAAAANAAATAAAAAAAAATTTAATAACGTTTTAAAATGGTATAGTTTTAAT
AAAAAAAAAAAAAAAACCACTATCATTAGTAGTAAAAAAAAAATAAAAAATAAAAAAAAA
AAAANTAAAAAAAAATAATAATAAGCTATACCATGGGACTTAGAGAAAATAAAAAAGTTT
AAAAAAAAAATAAAAAATAATAAAAAATAAAAAAAAAATAAAAAAAA----------AAA
AAAAAAAAAAAGAAAAAAAAAAAAATATTAAAATATTTTTTTTAAAATCAATTTTAAATA
TAAATAATAATGTTTTTTTTTTTTTTATAAAAAAAAGAAAGAAAAAAAGAAAAAAAAAAA
AAAAAGAAAAAAAGAATTTAAAAAAAAAAAAAAAAATAGAAAAAAAAAAGTTAAAGATGT
AATGGTAAAACCAAAGTAGAATGGAAATCCAAAAAAAGATCTTTATAAATTGCCACTATA
ATCAATGTATAGATATTGTTCCGTCTGTGTGTATGCTGTTAGGTCCAGTTTGCTCTTTAG
TTACTTTAATTTAAACTATAGATCAATTTCAATATGTAATAATTTTTTTAAAAAAAAAAA
CAAAAAAAAACAAAAAGGTAATAATAATA
Length of connected seq. 619
Full length Seq ID -
Full length Seq. -
Length of full length seq. -