>SLF241 (SLF241Q) /CSM/SL/SLF2-B/SLF241Q.Seq.d/
XXXXXXXXXXAATAATAATAATAACAACAATAGTAGTAATAATAATAATAATAACTCTTC
AAATATGTCAGAACCATCACCAATTTCAGCATTTTTTCATCAACCATCCACTCCATCAAA
AACATTTAGAATGTTTGATAAAACACCATCAAGTCCATCAACACCATTAGGTTTCGATAA
ATTAACTCTTCCATCGATTTATTCCTCTTTAGAAAATATTTCTCTTAACCCTTCAAATAT
TATGAATCATACTTCAACTTCACTTTCAATCTCTAAACAACAAAAATTAAAAGAATCTGA
TTCTGATAAAAAAGAAAAGAATGATGAATCTTCTTCAACCGGAGTTCCAATTGTTAAACA
AGAAGTCACTGAAGAAAAACAACAAGAATTAAAACAACAAGAATTAAAACAACAAGAATT
AAAACAACAAGAATTAAAACAACAACAACAAGAGAAAGAAGAAAAAGAA

---NNNNNNSSNNNNNNSSNMSEPSPISAFFHQPSTPSKTFRMFDKTPSSPSTPLGFDKL
TLPSIYSSLENISLNPSNIMNHTSTSLSISKQQKLKESDSDKKEKNDESSSTGVPIVKQE
VTEEKQQELKQQELKQQELKQQELKQQQQEKEEKE

Frame A:
---iiiittivviiiiitlqicqnhhqfqhffinhplhqkhleclikhhqvhqhh*vsin
*lfhrfipl*kiflltlqil*iilqlhfqslnnkn*knlilikkkrmmnllqpefqllnk
kslkknnkn*nnkn*nnkn*nnkn*nnnnkrkkkk


Frame B:
---****qq********lfkyvrtitnfsifsstihsikni*nv**ntiksintirfr*i
nssidlflfrkyfs*pfkyyesyfnftfnl*ttkikri*f**krke**iffnrssnc*tr
sh*rkttrikttrikttrikttrikttttrerrkr


Frame C:
---NNNNNNSSNNNNNNSSNMSEPSPISAFFHQPSTPSKTFRMFDKTPSSPSTPLGFDKL
TLPSIYSSLENISLNPSNIMNHTSTSLSISKQQKLKESDSDKKEKNDESSSTGVPIVKQE
VTEEKQQELKQQELKQQELKQQELKQQQQEKEEKE

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLF241 (SLF241Q) /CSM/SL/SLF2-B/SLF241Q.Seq.d/                        632   e-180
VSK117 (VSK117Q) /CSM/VS/VSK1-A/VSK117Q.Seq.d/                         44   0.002
SSB602 (SSB602Q) /CSM/SS/SSB6-A/SSB602Q.Seq.d/                         44   0.002
AFL422 (AFL422Q) /CSM/AF/AFL4-A/AFL422Q.Seq.d/                         44   0.002
SLJ781 (SLJ781Q) /CSM/SL/SLJ7-D/SLJ781Q.Seq.d/                         40   0.029
VHC247 (VHC247Q) /CSM/VH/VHC2-B/VHC247Q.Seq.d/                         36   0.46
VFM721 (VFM721Q) /CSM/VF/VFM7-A/VFM721Q.Seq.d/                         36   0.46
VFM643 (VFM643Q) /CSM/VF/VFM6-B/VFM643Q.Seq.d/                         36   0.46
VFL683 (VFL683Q) /CSM/VF/VFL6-D/VFL683Q.Seq.d/                         36   0.46
SSJ458 (SSJ458Q) /CSM/SS/SSJ4-C/SSJ458Q.Seq.d/                         36   0.46

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AL929357|AL929357.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 3/5.    40  0.052  10
BH158426|BH158426.1 ENTSL91TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    36  0.17  3
AC110303|AC110303.5 Rattus norvegicus clone CH230-223E3, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    46  0.37  1
AJ563055|AJ563055.1 Cryptosporidium parvum GSS, PAC clone pica_0013_d05, T7 end  sequence.    46  0.37  1
AJ563070|AJ563070.1 Cryptosporidium parvum GSS, PAC clone pica_0013_e03, SP6 end  sequence.    46  0.37  1
BM169723|BM169723.1 EST572246 PyBS Plasmodium yoelii yoelii cDNA clone PYCPV64 5' end, mRNA sequence.    46  0.37  1
BM170661|BM170661.1 EST573184 PyBS Plasmodium yoelii yoelii cDNA clone PYCQJ44 5' end, mRNA sequence.    46  0.37  1
BM166300|BM166300.1 EST568823 PyBS Plasmodium yoelii yoelii cDNA clone PYCNF80 5' end, mRNA sequence.    46  0.37  1
BM165128|BM165128.1 EST567651 PyBS Plasmodium yoelii yoelii cDNA clone PYCMH51 5' end, mRNA sequence.    46  0.37  1
BM161197|BM161197.1 EST563720 PyBS Plasmodium yoelii yoelii cDNA clone PYCKB81 5' end, mRNA sequence.    46  0.37  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC166388_1(BC166388|pid:none) Xenopus tropicalis neurofilament 3...    34   1.7
AP003706_5(AP003706|pid:none) Oryza sativa Japonica Group genomi...    34   1.7
CU633873_40(CU633873|pid:none) Podospora anserina genomic DNA ch...    33   2.9
AM270295_28(AM270295|pid:none) Aspergillus niger contig An13c001...    33   2.9
AP004852_1(AP004852|pid:none) Oryza sativa Japonica Group genomi...    33   2.9
BC047248_1(BC047248|pid:none) Xenopus laevis middle molecular we...    33   3.8
U85969_1(U85969|pid:none) Xenopus laevis middle molecular weight...    33   3.8
BC074454_1(BC074454|pid:none) Xenopus laevis middle molecular we...    33   3.8
CP000361_725(CP000361|pid:none) Arcobacter butzleri RM4018, comp...    32   5.0
AC006618_1(AC006618|pid:none) Caenorhabditis elegans cosmid C45B...    32   8.6

 psg: 0.61  gvh: 0.39  alm: 0.54  top: 0.53  tms: 0.00  mit: 0.31  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	 24.0 %: mitochondrial

>> prediction for SLF241 is nuc

>SLF241Z.Seq
----------AATAATAATAATAACAACAATAGTAGTAATAATAATAATAATAACTCTTC
AAATATGTCAGAACCATCACCAATTTCAGCATTTTTTCATCAACCATCCACTCCATCAAA
AACATTTAGAATGTTTGATAAAACACCATCAAGTCCATCAACACCATTAGGTTTCGATAA
ATTAACTCTTCCATCGATTTATTCCTCTTTAGAAAATATTTCTCTTAACCCTTCAAATAT
TATGAATCATACTTCAACTTCACTTTCAATCTCTAAACAACAAAAATTAAAAGAATCTGA
TTCTGATAAAAAAGAAAAGAATGATGAATCTTCTTCAACCGGAGTTCCAATTGTTAAACA
AGAAGTCACTGAAGAAAAACAACAAGAATTAAAACAACAAGAATTAAAACAACAAGAATT
AAAACAACAAGAATTAAAACAACAACAACAAGAGAAAGAAGAAAAAGAA