SLF236
Library SL
(Link to library)
Clone ID SLF236
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16478-1
Original site URL
Representative seq. ID SLF236Z
(Link to Original site)
Representative DNA sequence
>SLF236 (SLF236Q) /CSM/SL/SLF2-B/SLF236Q.Seq.d/
XXXXXXXXXXCCCAATGCAAGTTTCAAAAGATGCTGAAGATCTCTACAAAGCTGGTGAAG
GTAAAATTGGTACCGACGAAAAGGAATTCATCAAAATTCTCACCTCTCGTTCATTACCAC
ATATTGCTGCCGTCGCTAGTGAATACATTAAACATCACAAAAAACACTCACTCGTCAAAG
CAATCGATTCTGAATTCNCTGGTTCAATTAAAACTGGTTTAATCGNTATCGTTACCTATG
CTCTCAACCCATATGGTTATTTCGCTGAAATCTTAAACAAATCAATGAAAGGTGCTGGTA
CAAATGATAACAAACTCATTCGTACTGTNGAAACTCAAATGCACAATATGCCACAAATTA
AAACTGCTTATTCAACTCTCTTCAAGAATTCATTAGCTCATGATATTCAAGCTGATTGTA
GTGGTGATTTCAAAAAATTATTATTAGATATTATCTCATAAAATACTAATTTTCCAT
sequence update 1999. 7.15
Translated Amino Acid sequence
---PMQVSKDAEDLYKAGEGKIGTDEKEFIKILTSRSLPHIAAVASEYIKHHKKHSLVKA
IDSEFXGSIKTGLIXIVTYALNPYGYFAEILNKSMKGAGTNDNKLIRTVETQMHNMPQIK
TAYSTLFKNSLAHDIQADCSGDFKKLLLDIIS*ntnfp


Translated Amino Acid sequence (All Frames)
Frame A:
---PMQVSKDAEDLYKAGEGKIGTDEKEFIKILTSRSLPHIAAVASEYIKHHKKHSLVKA
IDSEFXGSIKTGLIXIVTYALNPYGYFAEILNKSMKGAGTNDNKLIRTVETQMHNMPQIK
TAYSTLFKNSLAHDIQADCSGDFKKLLLDIIS*ntnfp


Frame B:
---qckfqkmlkistklvkvklvptkrnsskfsplvhyhillpslvntlnitknthsskq
silnslvqlklv*sxslpmlsthmvislks*tnq*kvlvqmitnsfvlxklkctichklk
lliqlssrih*lmifklivvvisknyy*ilshkilifh


Frame C:
---nasfkrc*rslqsw*r*nwyrrkgihqnshlsfittyccrr**ih*tsqktltrqsn
rf*ixwfn*nwfnryrylcsqpiwlfr*nlkqinercwyk**qthsycxnsnaqyatn*n
clfnslqefiss*yss*l*w*fqkiiiryyliky*fs


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLF236 (SLF236Q) /CSM/SL/SLF2-B/SLF236Q.Seq.d/ 908 0.0
SLI544 (SLI544Q) /CSM/SL/SLI5-B/SLI544Q.Seq.d/ 884 0.0
SLH871 (SLH871Q) /CSM/SL/SLH8-C/SLH871Q.Seq.d/ 884 0.0
SLH649 (SLH649Q) /CSM/SL/SLH6-C/SLH649Q.Seq.d/ 884 0.0
SLH384 (SLH384Q) /CSM/SL/SLH3-D/SLH384Q.Seq.d/ 884 0.0
SLH343 (SLH343Q) /CSM/SL/SLH3-B/SLH343Q.Seq.d/ 884 0.0
SLG704 (SLG704Q) /CSM/SL/SLG7-A/SLG704Q.Seq.d/ 884 0.0
SLE724 (SLE724Q) /CSM/SL/SLE7-A/SLE724Q.Seq.d/ 884 0.0
SLD403 (SLD403Q) /CSM/SL/SLD4-A/SLD403Q.Seq.d/ 884 0.0
SLD164 (SLD164Q) /CSM/SL/SLD1-C/SLD164Q.Seq.d/ 884 0.0

own update 2002. 7. 6
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

X60270|X60270.1 D.discoideum DdANN7 mRNA for annexin VII, partial cds. 876 0.0 1
M69022|M69022.1 D.discoideum annexin VII (synexin) mRNA, complete cds. 860 0.0 1
X60269|X60269.1 D.discoideum DdANN7 gene for annexin VII, partial cds. 157 1e-34 1
AX348842|AX348842.1 Sequence 300 from Patent WO0202807. 40 0.22 4
AX281488|AX281488.1 Sequence 152 from Patent WO0177376. 40 0.22 4
AL618177|AL618177.1 T3 end of clone 018BB01 of library SmBAC1 from strain Puerto-Rican of Schistosoma mansoni. 36 0.33 2
BH181227|BH181227.1 018_C_02-rev SmBAC1 Schistosoma mansoni genomic clone 018C02 5', DNA sequence. 36 0.33 2
AX345722|AX345722.1 Sequence 793 from Patent WO0200928. 40 0.50 2
BZ313561|BZ313561.1 hz08g12.b1 WGS-ZmaysF (JM107 adapted methyl filtered) Zea mays genomic clone hz08g12 5', DNA sequence. 32 0.64 3
AC117076|AC117076.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence. 42 0.81 5
dna update 2003. 7.14
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P24639) RecName: Full=Annexin A7; AltName: Full=Annexin-7; AltN... 289 2e-77
M69022_1(M69022|pid:none) D.discoideum annexin VII (synexin) mRN... 289 2e-77
AK061821_1(AK061821|pid:none) Oryza sativa Japonica Group cDNA c... 126 3e-28
BC068035_1(BC068035|pid:none) Xenopus tropicalis annexin A7, mRN... 119 3e-26
FB831460_1(FB831460|pid:none) Sequence 50733 from Patent WO20080... 119 3e-26
AK059408_1(AK059408|pid:none) Oryza sativa Japonica Group cDNA c... 119 4e-26
FB831434_1(FB831434|pid:none) Sequence 50707 from Patent WO20080... 117 1e-25
(P26256) RecName: Full=Annexin-B12; AltName: Full=Annexin-12; Al... 114 8e-25
BT059478_1(BT059478|pid:none) Salmo salar clone ssal-rgf-513-011... 113 2e-24
FB831316_1(FB831316|pid:none) Sequence 50589 from Patent WO20080... 112 4e-24
protein update 2009. 4.18
PSORT

psg: 0.75 gvh: 0.43 alm: 0.41 top: 0.53 tms: 0.00 mit: 0.23 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

60.0 %: cytoplasmic
20.0 %: nuclear
8.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for SLF236 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLF236Z
3' end seq.
>SLF236Z.Seq
----------CCCAATGCAAGTTTCAAAAGATGCTGAAGATCTCTACAAAGCTGGTGAAG
GTAAAATTGGTACCGACGAAAAGGAATTCATCAAAATTCTCACCTCTCGTTCATTACCAC
ATATTGCTGCCGTCGCTAGTGAATACATTAAACATCACAAAAAACACTCACTCGTCAAAG
CAATCGATTCTGAATTCNCTGGTTCAATTAAAACTGGTTTAATCGNTATCGTTACCTATG
CTCTCAACCCATATGGTTATTTCGCTGAAATCTTAAACAAATCAATGAAAGGTGCTGGTA
CAAATGATAACAAACTCATTCGTACTGTNGAAACTCAAATGCACAATATGCCACAAATTA
AAACTGCTTATTCAACTCTCTTCAAGAATTCATTAGCTCATGATATTCAAGCTGATTGTA
GTGGTGATTTCAAAAAATTATTATTAGATATTATCTCATAAAATACTAATTTTCCAT
Length of 3' end seq. 467
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -