SLF224
Library SL
(Link to library)
Clone ID SLF224
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16200-1
Original site URL
Representative seq. ID SLF224Z
(Link to Original site)
Representative DNA sequence
>SLF224 (SLF224Q) /CSM/SL/SLF2-A/SLF224Q.Seq.d/
XXXXXXXXXXGTTGATGATGAACAAAAAGCCAAGAATCAACAAATCAAAGAAAACAGGAA
GATCGAAACCGAACTCAAAGAATACAGAAAGAAATTCGGCGAATCAGAAAAGACCAAGAC
CAAAGAATTCCTCGTTGTCGAAAAACTCGAAACAGATTACAAGAGAGCCAAGAAAGAAGC
TGCTGATGAACAACAACAACGTCTTACTGTTGAAAACGATCTCCGTAAACACCTCAGTGA
AATCTCATTACTCAAAGATGCCATTGATAAGTTACAACGTGATCACGATAAGACCAAACG
TGAATTGGAAACAGAAACTGCCAGCAAAATCGAAATGCAAAGAAAGATGGCCGATTTCTT
TGGTGGTTTCAAAGCTTAAATCAATTTGATTTCTTCTTAATTCAATGCTAAAAAAAAAAA
TATTATAAAAAAAAAAACACACACAACAAATAAATTAATAAATACCATTTATTAAAAAAA
AAAAAAAAAAAAAAAAAAAA
sequence update 1999. 7.15
Translated Amino Acid sequence
---LMMNKKPRINKSKKTGRSKPNSKNTERNSANQKRPRPKNSSLSKNSKQITREPRKKL
LMNNNNVLLLKTISVNTSVKSHYSKMPLISYNVITIRPNVNWKQKLPAKSKCKERWPISL
VVSKLKSI*fllnsmlkkkil*kkkhtqqin**ipfikkkkkkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
---LMMNKKPRINKSKKTGRSKPNSKNTERNSANQKRPRPKNSSLSKNSKQITREPRKKL
LMNNNNVLLLKTISVNTSVKSHYSKMPLISYNVITIRPNVNWKQKLPAKSKCKERWPISL
VVSKLKSI*fllnsmlkkkil*kkkhtqqin**ipfikkkkkkkkk


Frame B:
---***tksqestnqrkqedrnrtqriqkeirrirkdqdqriprcrktrnrlqesqersc
**ttttsyc*krsp*tpq*nlitqrch**vtt*sr*dqt*ignrncqqnrnakkdgrflw
wfqslnqfdffliqc*kkkyykkknthnk*inkyhllkkkkkkkk


Frame C:
---ddeqkaknqqikenrkietelkeyrkkfgesektktkeflvvekletdykrakkeaa
deqqqrltvendlrkhlseisllkdaidklqrdhdktkreletetaskiemqrkmadffg
gfka*inliss*fnakkkniikkkthttnklintiy*kkkkkkkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLF224 (SLF224Q) /CSM/SL/SLF2-A/SLF224Q.Seq.d/ 791 0.0
SLH383 (SLH383Q) /CSM/SL/SLH3-D/SLH383Q.Seq.d/ 775 0.0
SLG338 (SLG338Q) /CSM/SL/SLG3-B/SLG338Q.Seq.d/ 775 0.0
SLF203 (SLF203Q) /CSM/SL/SLF2-A/SLF203Q.Seq.d/ 775 0.0
SLF117 (SLF117Q) /CSM/SL/SLF1-A/SLF117Q.Seq.d/ 775 0.0
SLE377 (SLE377Q) /CSM/SL/SLE3-D/SLE377Q.Seq.d/ 775 0.0
SLC646 (SLC646Q) /CSM/SL/SLC6-B/SLC646Q.Seq.d/ 775 0.0
SLC107 (SLC107Q) /CSM/SL/SLC1-A/SLC107Q.Seq.d/ 775 0.0
FCL-AA08 (FCL-AA08Q) /CSM/FCL/FCL-AA/FCL-AA08Q.Seq.d/ 775 0.0
SLH805 (SLH805Q) /CSM/SL/SLH8-A/SLH805Q.Seq.d/ 767 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

M14628|M14628.1 D.discoideum myosin heavy chain gene, complete cds. 775 0.0 2
AQ979186|AQ979186.1 RPCI-23-294P17.TJ RPCI-23 Mus musculus genomic clone RPCI-23-294P17, genomic survey sequence. 50 0.025 1
AL400389|AL400389.1 T7 end of clone AS0AA021D07 of library AS0AA from strain CLIB 533 of Saccharomyces bayanus. 42 0.028 2
AL433069|AL433069.1 T3 end of clone BB0AA014B02 of library BB0AA from strain CBS 4732 of Pichia angusta. 42 0.39 2
AC106629|AC106629.4 Rattus norvegicus clone CH230-218O2, WORKING DRAFT SEQUENCE, 2 unordered pieces. 46 0.39 1
BI503057|BI503057.1 BB170006A20B12 Bee Brain Normalized/Subtracted Library, BB17 Apis mellifera cDNA clone BB170006A20B12 5', mRNA sequence. 46 0.39 1
BI505133|BI505133.1 BB170017A10F09 Bee Brain Normalized/Subtracted Library, BB17 Apis mellifera cDNA clone BB170017A10F09 5', mRNA sequence. 46 0.39 1
AC121781|AC121781.2 Mus musculus chromosome UNK clone RP23-363D24, WORKING DRAFT SEQUENCE, 2 unordered pieces. 34 0.67 8
AL807803|AL807803.6 Mouse DNA sequence from clone RP23-96B14 on chromosome X. 34 0.71 8
AL353684|AL353684.8 Human DNA sequence from clone RP11-275A14 on chromosome 9. 36 0.76 3
dna update 2003. 7.14
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P08799) RecName: Full=Myosin-2 heavy chain; AltName: Full=Myosi... 235 5e-61
A26655(A26655;A24728;S00250) myosin heavy chain [similarity] - s... 235 5e-61
A48575(A48575)paramyosin - nematode (Onchocerca volvulus) 49 8e-05
(Q02171) RecName: Full=Paramyosin; &M95813_1(M95813|pid:none) 49 8e-05
AF136711_1(AF136711|pid:none) Amoeba proteus myosin heavy chain ... 48 1e-04
(A5E4P1) RecName: Full=Protein PXR1; AltName: Full=PinX1-related... 48 1e-04
AP007161_144(AP007161|pid:none) Aspergillus oryzae RIB40 genomic... 47 2e-04
CR318631_6(CR318631|pid:none) Zebrafish DNA sequence from clone ... 46 4e-04
AF335500_1(AF335500|pid:none) Physarum polycephalum major plasmo... 46 4e-04
CP000123_804(CP000123|pid:none) Mycoplasma capricolum subsp. cap... 46 5e-04
protein update 2009. 4.18
PSORT

psg: 0.39 gvh: 0.06 alm: 0.50 top: 0.53 tms: 0.00 mit: 0.41 mip: 0.00
nuc: 0.27 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

84.0 %: nuclear
12.0 %: cytoplasmic
4.0 %: mitochondrial

>> prediction for SLF224 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLF224Z
3' end seq.
>SLF224Z.Seq
----------GTTGATGATGAACAAAAAGCCAAGAATCAACAAATCAAAGAAAACAGGAA
GATCGAAACCGAACTCAAAGAATACAGAAAGAAATTCGGCGAATCAGAAAAGACCAAGAC
CAAAGAATTCCTCGTTGTCGAAAAACTCGAAACAGATTACAAGAGAGCCAAGAAAGAAGC
TGCTGATGAACAACAACAACGTCTTACTGTTGAAAACGATCTCCGTAAACACCTCAGTGA
AATCTCATTACTCAAAGATGCCATTGATAAGTTACAACGTGATCACGATAAGACCAAACG
TGAATTGGAAACAGAAACTGCCAGCAAAATCGAAATGCAAAGAAAGATGGCCGATTTCTT
TGGTGGTTTCAAAGCTTAAATCAATTTGATTTCTTCTTAATTCAATGCTAAAAAAAAAAA
TATTATAAAAAAAAAAACACACACAACAAATAAATTAATAAATACCATTTATTAAAAAAA
AAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 490
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -