SLF221
Library SL
(Link to library)
Clone ID SLF221
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U01292-1
Original site URL
Representative seq. ID SLF221P
(Link to Original site)
Representative DNA sequence
>SLF221 (SLF221Q) /CSM/SL/SLF2-A/SLF221Q.Seq.d/
TGGAATTAAATGATAATAGAATTTCAGGTGGATTATCAGTATTATCAGATTTTGAAAAAT
TAGAATCATTAAGTTTAAGTGGAAATCAAATTAAAACTTTAGGAGATTTAGAACCATTAG
GTAACTTACAATCACTTCAATTTTTAGATTTATTTGCTTGTCCTGTAACACTCTTACCAA
ATTATTCAAAAGAATTATTCTCCATGATAAAATCATTAGTTGCATTGGATGGTTATGATA
TAAATGGAAAAGAGATTGAGGATGATGXXXXXXXXXXTAATAACAGCACAACAAATATAA
ATATAGGAAGTAATACTCCAGGTAAAGGTACATTTAGACAGGGTAGTAAAGAGAAAAAAA
TTAGTAAACCATATGACATTTTAAATCAAAGTTATCATTCTGATGAGGATGAAGATTATG
AACCATCAATGAGTGAAGATGGTGGCGATGAAAGTTTAGAGGACTCTGATTCTCAAGCTG
AAGAAGAAGAAGAAGAGGAGGATGACTATGATCAAGAAGAAGAGGATAAAATTGTTGCTC
AGTATAAACAATTAAGAGCACAAGGTATACCTCCAAAACATAGTAATTCAAACGATGAAG
ATGATTATGAAGATGATTCTTTTAATAAAAACACAACCAAACCATATGTACAAAATGAAG
ATTCCGAAGATGAAGCATCTGATGAGGATTATAGTGATAGTTTATCTAAAAAGAGAAAAA
ATGAACAAGATGACTCGCATCTTTCAAAGAAGAGAGCTTTTTAAAAAAAAAAAAAAAAAA
TTAAAT
sequence update 1999. 2.12
Translated Amino Acid sequence
ELNDNRISGGLSVLSDFEKLESLSLSGNQIKTLGDLEPLGNLQSLQFLDLFACPVTLLPN
YSKELFSMIKSLVALDGYDINGKEIEDD---

---NNSTTNINIGSNTPGKGTFRQGSKEKKISKPYDILNQSYHSDEDEDYEPSMSEDGGD
ESLEDSDSQAEEEEEEEDDYDQEEEDKIVAQYKQLRAQGIPPKHSNSNDEDDYEDDSFNK
NTTKPYVQNEDSEDEASDEDYSDSLSKKRKNEQDDSHLSKKRAF*kkkkkik


Translated Amino Acid sequence (All Frames)
Frame A:
wn*miiefqvdyqyyqilkn*nh*v*veiklkl*ei*nh*vtynhfnf*iyllvl*hsyq
iiqknysp**nh*lhwmvmi*mekrlrmm---

---**qhnkykyrk*ysr*ryi*tg**rekn**ti*hfksklsf**g*rl*tine*rwwr
*kfrgl*fss*rrrrrgg*l*srrrg*nccsv*tikstrytskt**fkr*r*l*r*ff**
khnqtictk*rfrr*si**gl***fi*kekk*tr*lasfkeesflkkkkkn*

Frame B:
gik***nfrwiisiirf*kiriikfkwksn*nfrrfrtir*ltitsifrficlscntltk
lfkriilhdkiiscigwl*ykwkrd*g*---

---NNSTTNINIGSNTPGKGTFRQGSKEKKISKPYDILNQSYHSDEDEDYEPSMSEDGGD
ESLEDSDSQAEEEEEEEDDYDQEEEDKIVAQYKQLRAQGIPPKHSNSNDEDDYEDDSFNK
NTTKPYVQNEDSEDEASDEDYSDSLSKKRKNEQDDSHLSKKRAF*kkkkkik

Frame C:
ELNDNRISGGLSVLSDFEKLESLSLSGNQIKTLGDLEPLGNLQSLQFLDLFACPVTLLPN
YSKELFSMIKSLVALDGYDINGKEIEDD---

---itaqqi*i*evilqvkvhldrvvkrkklvnhmtf*ikviilmrmkimnhq*vkmvam
kv*rtlilklkkkkkrrmtmikkkriklllsinn*ehkvylqniviqtmkmimkmillik
tqpnhmykmkipkmkhlmriivivylkrekmnkmtrifqrrelfkkkkkkln

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLF221 (SLF221Q) /CSM/SL/SLF2-A/SLF221Q.Seq.d/ 848 0.0
VSA683 (VSA683Q) /CSM/VS/VSA6-D/VSA683Q.Seq.d/ 527 e-149
VHG188 (VHG188Q) /CSM/VH/VHG1-D/VHG188Q.Seq.d/ 42 0.013
VHP518 (VHP518Q) /CSM/VH/VHP5-A/VHP518Q.Seq.d/ 40 0.050
VHO761 (VHO761Q) /CSM/VH/VHO7-C/VHO761Q.Seq.d/ 40 0.050
VHN574 (VHN574Q) /CSM/VH/VHN5-D/VHN574Q.Seq.d/ 40 0.050
VHN219 (VHN219Q) /CSM/VH/VHN2-A/VHN219Q.Seq.d/ 40 0.050
VHM831 (VHM831Q) /CSM/VH/VHM8-B/VHM831Q.Seq.d/ 40 0.050
VHL478 (VHL478Q) /CSM/VH/VHL4-D/VHL478Q.Seq.d/ 40 0.050
VHL263 (VHL263Q) /CSM/VH/VHL2-C/VHL263Q.Seq.d/ 40 0.050

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU052860) Dictyostelium discoideum slug cDNA, clone SLF221. 527 0.0 3
(AU261657) Dictyostelium discoideum vegetative cDNA clone:VS... 527 e-150 2
(AU061650) Dictyostelium discoideum slug cDNA, clone SLF221. 527 e-145 1
(FC748847) CBBI4173.fwd CBBI Lottia gigantea 26h,37h,61h Lar... 44 0.006 2
(FC749898) CBBI4799.fwd CBBI Lottia gigantea 26h,37h,61h Lar... 44 0.006 2
(FC743598) CBBI13801.fwd CBBI Lottia gigantea 26h,37h,61h La... 44 0.006 2
(FC718698) CBBG12305.fwd CBBG Lottia gigantea 12,15,18h embr... 44 0.006 2
(FC754228) CBBI7859.fwd CBBI Lottia gigantea 26h,37h,61h Lar... 44 0.006 2
(FC681167) CAXX14934.fwd CAXX Lottia gigantea from male gona... 44 0.006 2
(FC559227) CAWF2182.fwd CAWF Lottia gigantea from mantle (H)... 44 0.006 2
dna update 2009. 5. 4
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

BC090607_1(BC090607|pid:none) Xenopus tropicalis MGC69373 protei... 86 1e-15
BT056577_1(BT056577|pid:none) Salmo salar clone ssal-rgb2-607-35... 86 2e-15
BT059721_1(BT059721|pid:none) Salmo salar clone ssal-rgf-510-310... 85 2e-15
BT073039_1(BT073039|pid:none) Oncorhynchus mykiss clone omyk-evn... 85 3e-15
DQ000553_1(DQ000553|pid:none) Synthetic construct clone PSF:1090... 84 5e-15
(P39687) RecName: Full=Acidic leucine-rich nuclear phosphoprotei... 84 5e-15
(P51122) RecName: Full=Acidic leucine-rich nuclear phosphoprotei... 84 5e-15
BC125143_1(BC125143|pid:none) Homo sapiens acidic (leucine-rich)... 84 5e-15
(Q7ZUP0) RecName: Full=Acidic leucine-rich nuclear phosphoprotei... 84 7e-15
(Q5ZMN0) RecName: Full=Acidic leucine-rich nuclear phosphoprotei... 84 7e-15
protein update 2009. 6. 3
PSORT

psg: 0.75 gvh: 0.55 alm: 0.39 top: 0.53 tms: 0.00 mit: 0.15 mip: 0.00
nuc: 0.17 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
32.0 %: cytoplasmic
8.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for SLF221 is nuc

5' end seq. ID SLF221F
5' end seq.
>SLF221F.Seq
TGGAATTAAATGATAATAGAATTTCAGGTGGATTATCAGTATTATCAGATTTTGAAAAAT
TAGAATCATTAAGTTTAAGTGGAAATCAAATTAAAACTTTAGGAGATTTAGAACCATTAG
GTAACTTACAATCACTTCAATTTTTAGATTTATTTGCTTGTCCTGTAACACTCTTACCAA
ATTATTCAAAAGAATTATTCTCCATGATAAAATCATTAGTTGCATTGGATGGTTATGATA
TAAATGGAAAAGAGATTGAGGATGATG----------
Length of 5' end seq. 267
3' end seq. ID SLF221Z
3' end seq.
>SLF221Z.Seq
----------TAATAACAGCACAACAAATATAAATATAGGAAGTAATACTCCAGGTAAAG
GTACATTTAGACAGGGTAGTAAAGAGAAAAAAATTAGTAAACCATATGACATTTTAAATC
AAAGTTATCATTCTGATGAGGATGAAGATTATGAACCATCAATGAGTGAAGATGGTGGCG
ATGAAAGTTTAGAGGACTCTGATTCTCAAGCTGAAGAAGAAGAAGAAGAGGAGGATGACT
ATGATCAAGAAGAAGAGGATAAAATTGTTGCTCAGTATAAACAATTAAGAGCACAAGGTA
TACCTCCAAAACATAGTAATTCAAACGATGAAGATGATTATGAAGATGATTCTTTTAATA
AAAACACAACCAAACCATATGTACAAAATGAAGATTCCGAAGATGAAGCATCTGATGAGG
ATTATAGTGATAGTTTATCTAAAAAGAGAAAAAATGAACAAGATGACTCGCATCTTTCAA
AGAAGAGAGCTTTTTAAAAAAAAAAAAAAAAAATTAAAT
Length of 3' end seq. 509
Connected seq. ID SLF221P
Connected seq.
>SLF221P.Seq
TGGAATTAAATGATAATAGAATTTCAGGTGGATTATCAGTATTATCAGATTTTGAAAAAT
TAGAATCATTAAGTTTAAGTGGAAATCAAATTAAAACTTTAGGAGATTTAGAACCATTAG
GTAACTTACAATCACTTCAATTTTTAGATTTATTTGCTTGTCCTGTAACACTCTTACCAA
ATTATTCAAAAGAATTATTCTCCATGATAAAATCATTAGTTGCATTGGATGGTTATGATA
TAAATGGAAAAGAGATTGAGGATGATG----------TAATAACAGCACAACAAATATAA
ATATAGGAAGTAATACTCCAGGTAAAGGTACATTTAGACAGGGTAGTAAAGAGAAAAAAA
TTAGTAAACCATATGACATTTTAAATCAAAGTTATCATTCTGATGAGGATGAAGATTATG
AACCATCAATGAGTGAAGATGGTGGCGATGAAAGTTTAGAGGACTCTGATTCTCAAGCTG
AAGAAGAAGAAGAAGAGGAGGATGACTATGATCAAGAAGAAGAGGATAAAATTGTTGCTC
AGTATAAACAATTAAGAGCACAAGGTATACCTCCAAAACATAGTAATTCAAACGATGAAG
ATGATTATGAAGATGATTCTTTTAATAAAAACACAACCAAACCATATGTACAAAATGAAG
ATTCCGAAGATGAAGCATCTGATGAGGATTATAGTGATAGTTTATCTAAAAAGAGAAAAA
ATGAACAAGATGACTCGCATCTTTCAAAGAAGAGAGCTTTTTAAAAAAAAAAAAAAAAAA
TTAAAT
Length of connected seq. 776
Full length Seq ID -
Full length Seq. -
Length of full length seq. -