SLF213
Library SL
(Link to library)
Clone ID SLF213
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11424-1
Original site URL
Representative seq. ID SLF213E
(Link to Original site)
Representative DNA sequence
>SLF213 (SLF213Q) /CSM/SL/SLF2-A/SLF213Q.Seq.d/
CGAATCCGATCAAAATACCGAACTTAAAGTATTGTTAGCTCAACCATTACGTAGAGTCTC
TAAATACTATTTGGTCCTTCGTGAAATTCTTCAATACACTCGTCCAAAACATGATGATTA
CGATGCTTTAAATCGTGTAGTAGCTAATCTAAAAGATCAAACCGATAAATTTAATGCAAA
TTCAACCTCTCAAATGTCTGCTGAAGCTGGTTCAAAATCACATTCCCAAAAATATAAAAC
TATTAAATTAACTAAAAATTCTAAACAACCTTCACAATTCTTTGTTTAAATAATTTTTAA
AAAAATAAATTAAATAATTAAATAATAAAATAATAATAAAATTAAATAAAATAAAATAAA
ATAAATAA
sequence update 1998. 9.11
Translated Amino Acid sequence
ESDQNTELKVLLAQPLRRVSKYYLVLREILQYTRPKHDDYDALNRVVANLKDQTDKFNAN
STSQMSAEAGSKSHSQKYKTIKLTKNSKQPSQFFV*iifkkin*iik**nnnkik*nkik
*i


Translated Amino Acid sequence (All Frames)
Frame A:
rirskyrt*sivsstit*sl*ilfgps*nssihsskt**lrcfkscss*skrsnr*i*ck
fnlsnvc*swfkitfpki*ny*in*kf*ttftilclnnf*knklnn*iik***n*ik*nk
in


Frame B:
ESDQNTELKVLLAQPLRRVSKYYLVLREILQYTRPKHDDYDALNRVVANLKDQTDKFNAN
STSQMSAEAGSKSHSQKYKTIKLTKNSKQPSQFFV*iifkkin*iik**nnnkik*nkik
*i


Frame C:
npikipnlkyc*lnhyveslntiwsfvkffntlvqnmmitml*iv**li*kikpinlmqi
qplkcllklvqnhipkniklln*lkilnnlhnslfk*flkk*ik*lnnkiiiklnkik*n
k*


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLF213 (SLF213Q) /CSM/SL/SLF2-A/SLF213Q.Seq.d/ 571 e-162
SHH295 (SHH295Q) /CSM/SH/SHH2-D/SHH295Q.Seq.d/ 563 e-160
SHF747 (SHF747Q) /CSM/SH/SHF7-B/SHF747Q.Seq.d/ 559 e-158
AHJ522 (AHJ522Q) /CSM/AH/AHJ5-A/AHJ522Q.Seq.d/ 517 e-146
VSE638 (VSE638Q) /CSM/VS/VSE6-B/VSE638Q.Seq.d/ 44 0.001
SLH507 (SLH507Q) /CSM/SL/SLH5-A/SLH507Q.Seq.d/ 44 0.001
SFE505 (SFE505Q) /CSM/SF/SFE5-A/SFE505Q.Seq.d/ 44 0.001
SFD768 (SFD768Q) /CSM/SF/SFD7-C/SFD768Q.Seq.d/ 44 0.001
SFB161 (SFB161Q) /CSM/SF/SFB1-C/SFB161Q.Seq.d/ 44 0.001
CHE459 (CHE459Q) /CSM/CH/CHE4-C/CHE459Q.Seq.d/ 44 0.001

own update 2002.12.11
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU052854) Dictyostelium discoideum slug cDNA, clone SLF213. 563 e-156 1
(BJ407554) Dictyostelium discoideum cDNA clone:dds38m24, 3' ... 555 e-154 1
(BJ406489) Dictyostelium discoideum cDNA clone:dds35n11, 3' ... 551 e-153 1
(Y10159) D.discoideum racGAP gene. 424 e-145 2
(BJ353427) Dictyostelium discoideum cDNA clone:dda50k05, 3' ... 517 e-143 1
(BD452893) Diagnosis of Diseases Associated with tumor suppr... 50 0.059 1
(AX251372) Sequence 340 from Patent WO0168912. 50 0.059 1
(AL935269) Zebrafish DNA sequence from clone DKEY-46J18. 48 0.23 1
(AL929582) Zebrafish DNA sequence from clone CH211-117M12. 48 0.23 1
(CT737159) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 48 0.23 1
dna update 2009. 5. 4
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

T18289(T18289) racGAP protein - slime mold (Dictyostelium discoi... 143 2e-33
(Q55E26) RecName: Full=Rac guanine nucleotide exchange factor B;... 43 0.004
BT029984_1(BT029984|pid:none) Drosophila melanogaster LP16193 fu... 42 0.005
AE014298_2952(AE014298|pid:none) Drosophila melanogaster chromos... 42 0.005
CR450767_1(CR450767|pid:none) Zebrafish DNA sequence from clone ... 42 0.009
AB002335_1(AB002335|pid:none) Homo sapiens mRNA for KIAA0337 gen... 40 0.020
(Q96PE2) RecName: Full=Rho guanine nucleotide exchange factor 17... 40 0.020
(Q80U35) RecName: Full=Rho guanine nucleotide exchange factor 17; 40 0.033
AK122250_1(AK122250|pid:none) Mus musculus mRNA for mKIAA0337 pr... 40 0.033
AB001770_1(AB001770|pid:none) Ciona savignyi pem-2 (posterior en... 39 0.043
protein update 2009. 7. 5
PSORT

psg: 0.75 gvh: 0.37 alm: 0.49 top: 0.53 tms: 0.00 mit: 0.10 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
28.0 %: cytoplasmic
12.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for SLF213 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SLF213E
Full length Seq.
>SLF213E.Seq
CGAATCCGATCAAAATACCGAACTTAAAGTATTGTTAGCTCAACCATTACGTAGAGTCTC
TAAATACTATTTGGTCCTTCGTGAAATTCTTCAATACACTCGTCCAAAACATGATGATTA
CGATGCTTTAAATCGTGTAGTAGCTAATCTAAAAGATCAAACCGATAAATTTAATGCAAA
TTCAACCTCTCAAATGTCTGCTGAAGCTGGTTCAAAATCACATTCCCAAAAATATAAAAC
TATTAAATTAACTAAAAATTCTAAACAACCTTCACAATTCTTTGTTTAAATAATTTTTAA
AAAAATAAATTAAATAATTAAATAATAAAATAATAATAAAATTAAATAAAATAAAATAAA
ATAAATAA
Length of full length seq. 368