SLF208
Library SL
(Link to library)
Clone ID SLF208
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16475-1
Original site URL
Representative seq. ID SLF208P
(Link to Original site)
Representative DNA sequence
>SLF208 (SLF208Q) /CSM/SL/SLF2-A/SLF208Q.Seq.d/
CAATATTATTATATTTATTAAATATTACAACTGCGCAAAAGCCAGTGTCAATAAATATAA
AGATATTTGATCAATTACCTTTATATAATGATAATTTTGGTTCACAATCAAGAGCAGCAA
CCATTAAGAGTATGGTTGCAACATCATTAAATACAACATTTAAAACTCCAAGTTTAGGAT
CAGCCACCTCAAGCTTACCATCACCACAATTATTCCAATATTGGXXXXXXXXXXTGGTTG
TAATGCAACTCAACGTGTTTGTCCAAACTCTGGTGCTTGTAAAATTGGTTATTGTGAACC
TGGTTTCGGTTGTAAATTAAAGGATAGAGTTTGTTCTTCCGATTGGTATTGTATTGAAGC
TCAATGTGATGCAAAATATGGTTGCATTCAATTCGATAGAAGATGTGCTCCTGATAATAG
TAAATGTCAAGAAGGTGTCTGTGTAAACAATACTGCTATCGGTAAAAATGATGGAAAATG
TATTTCTGAAGATTATGATCCAAAACCATTTGTTTGTCAAAAAGCTGCTTTAGTTTCAAC
TGCTGTTATTGCAAGTGTTGTTGTAGTTGGTGCTGTTGTTTTAGGTGCTGCTATATTTGC
GGGTAAGAAAGGTTATGATGCTTGGAAAACAAGTCAAGGAAATGTTATGGCAGCTTCACA
AGCTAATCCATTATATACTCAATCAAGTAATGGAGGTGAAAATCCACTCTATAACTCACC
AACATAAATCCAAAAACCTAATTTATAAAATCATGTATTGTTTTAATTTTAATTTTTTTC
CAGTCTTATTTTCATAAAAATGCGCCTCAAATATATAATGTACAAAAA
sequence update 1999. 2.12
Translated Amino Acid sequence
ILLYLLNITTAQKPVSINIKIFDQLPLYNDNFGSQSRAATIKSMVATSLNTTFKTPSLGS
ATSSLPSPQLFQYW---

---GCNATQRVCPNSGACKIGYCEPGFGCKLKDRVCSSDWYCIEAQCDAKYGCIQFDRRC
APDNSKCQEGVCVNNTAIGKNDGKCISEDYDPKPFVCQKAALVSTAVIASVVVVGAVVLG
AAIFAGKKGYDAWKTSQGNVMAASQANPLYTQSSNGGENPLYNSPT*iqkpnl*nhvlf*
f*ffsslifikmrlkyimyk


Translated Amino Acid sequence (All Frames)
Frame A:
qyyyiy*ilqlrksqcq*i*rylinylyimiilvhnqeqqplrvwlqhh*iqhlklqv*d
qppqayhhhnysni---

---wl*cnstclsklwcl*nwll*twfrl*ikg*slffrlvly*ssm*ckiwlhsir*km
cs****msrrclckqycyr*k*wkmyf*rl*skticlskscfsfnccyckcccswcccfr
ccyicg*erl*clenksrkcygsfts*siiysik*wr*kstl*ltninpkt*fikscivl
iliffqsyfhknapqiynvqk

Frame B:
niiifikyyncakasvnkykdi*sitfi***fwftikssnh*eygcniikyni*nskfri
shlkltittiipil---

---GCNATQRVCPNSGACKIGYCEPGFGCKLKDRVCSSDWYCIEAQCDAKYGCIQFDRRC
APDNSKCQEGVCVNNTAIGKNDGKCISEDYDPKPFVCQKAALVSTAVIASVVVVGAVVLG
AAIFAGKKGYDAWKTSQGNVMAASQANPLYTQSSNGGENPLYNSPT*iqkpnl*nhvlf*
f*ffsslifikmrlkyimyk

Frame C:
ILLYLLNITTAQKPVSINIKIFDQLPLYNDNFGSQSRAATIKSMVATSLNTTFKTPSLGS
ATSSLPSPQLFQYW---

---vvmqlnvfvqtlvlvklvivnlvsvvn*riefvlpigivlklnvmqnmvafnsiedv
lliivnvkkvsv*tillsvkmmenvflkimiqnhlfvkkll*fqllllqvll*lvllf*v
llylrvrkvmmlgkqvkemlwqlhklihyilnqvmevkihsithqhksknliykimycfn
fnffpvlfs*kcasni*ctk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLF208 (SLF208Q) /CSM/SL/SLF2-A/SLF208Q.Seq.d/ 1447 0.0
SSG816 (SSG816Q) /CSM/SS/SSG8-A/SSG816Q.Seq.d/ 1043 0.0
SLE246 (SLE246Q) /CSM/SL/SLE2-B/SLE246Q.Seq.d/ 1043 0.0
SLB442 (SLB442Q) /CSM/SL/SLB4-B/SLB442Q.Seq.d/ 1043 0.0
SLB259 (SLB259Q) /CSM/SL/SLB2-C/SLB259Q.Seq.d/ 1043 0.0
SHL876 (SHL876Q) /CSM/SH/SHL8-D/SHL876Q.Seq.d/ 1043 0.0
SHG135 (SHG135Q) /CSM/SH/SHG1-B/SHG135Q.Seq.d/ 1043 0.0
SHF677 (SHF677Q) /CSM/SH/SHF6-D/SHF677Q.Seq.d/ 1043 0.0
SHD850 (SHD850Q) /CSM/SH/SHD8-C/SHD850Q.Seq.d/ 1043 0.0
SFJ347 (SFJ347Q) /CSM/SF/SFJ3-B/SFJ347Q.Seq.d/ 1043 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU052850) Dictyostelium discoideum slug cDNA, clone SLF208. 1043 0.0 2
(AU034728) Dictyostelium discoideum slug cDNA, clone SLE246. 1043 0.0 2
(AU033790) Dictyostelium discoideum slug cDNA, clone SLB442. 1043 0.0 2
(AU033641) Dictyostelium discoideum slug cDNA, clone SLB259. 1043 0.0 2
(C89992) Dictyostelium discoideum slug cDNA, clone SSG816. 1043 0.0 2
(BJ406741) Dictyostelium discoideum cDNA clone:dds36e09, 3' ... 1043 0.0 2
(BJ399374) Dictyostelium discoideum cDNA clone:dds5m15, 3' e... 1043 0.0 2
(BJ382247) Dictyostelium discoideum cDNA clone:ddc44i03, 3' ... 1043 0.0 2
(BJ379407) Dictyostelium discoideum cDNA clone:ddc34c23, 3' ... 1043 0.0 2
(BJ374076) Dictyostelium discoideum cDNA clone:ddc6m08, 3' e... 1043 0.0 2
dna update 2009. 5. 4
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54P69) RecName: Full=Protein psiM; Flags: Precursor; 297 3e-79
(Q86HT1) RecName: Full=Protein psiL; Flags: Precursor; &AC11695... 154 4e-36
(Q557E9) RecName: Full=Protein psiG; Flags: Precursor; &AC11568... 143 6e-33
(Q94494) RecName: Full=Protein psiH; Flags: Precursor; &U67940_... 139 1e-31
(Q54VS2) RecName: Full=Protein psiP; Flags: Precursor; 134 3e-30
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor; 108 3e-22
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor; 106 1e-21
(Q54C31) RecName: Full=Protein psiR; Flags: Precursor; 44 0.005
S44208(S44208) extracellular matrix protein B - Dictyostelium mi... 43 0.011
(Q968Z6) RecName: Full=Protein psiA; AltName: Full=Prespore-cell... 43 0.011
protein update 2009. 6. 3
PSORT

psg: 0.88 gvh: 0.41 alm: 0.16 top: 0.73 tms: 0.07 mit: 0.29 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 1.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

52.0 %: nuclear
28.0 %: cytoplasmic
8.0 %: mitochondrial
8.0 %: Golgi
4.0 %: vesicles of secretory system

>> prediction for SLF208 is nuc

5' end seq. ID SLF208F
5' end seq.
>SLF208F.Seq
CAATATTATTATATTTATTAAATATTACAACTGCGCAAAAGCCAGTGTCAATAAATATAA
AGATATTTGATCAATTACCTTTATATAATGATAATTTTGGTTCACAATCAAGAGCAGCAA
CCATTAAGAGTATGGTTGCAACATCATTAAATACAACATTTAAAACTCCAAGTTTAGGAT
CAGCCACCTCAAGCTTACCATCACCACAATTATTCCAATATTGG----------
Length of 5' end seq. 224
3' end seq. ID SLF208Z
3' end seq.
>SLF208Z.Seq
----------TGGTTGTAATGCAACTCAACGTGTTTGTCCAAACTCTGGTGCTTGTAAAA
TTGGTTATTGTGAACCTGGTTTCGGTTGTAAATTAAAGGATAGAGTTTGTTCTTCCGATT
GGTATTGTATTGAAGCTCAATGTGATGCAAAATATGGTTGCATTCAATTCGATAGAAGAT
GTGCTCCTGATAATAGTAAATGTCAAGAAGGTGTCTGTGTAAACAATACTGCTATCGGTA
AAAATGATGGAAAATGTATTTCTGAAGATTATGATCCAAAACCATTTGTTTGTCAAAAAG
CTGCTTTAGTTTCAACTGCTGTTATTGCAAGTGTTGTTGTAGTTGGTGCTGTTGTTTTAG
GTGCTGCTATATTTGCGGGTAAGAAAGGTTATGATGCTTGGAAAACAAGTCAAGGAAATG
TTATGGCAGCTTCACAAGCTAATCCATTATATACTCAATCAAGTAATGGAGGTGAAAATC
CACTCTATAACTCACCAACATAAATCCAAAAACCTAATTTATAAAATCATGTATTGTTTT
AATTTTAATTTTTTTCCAGTCTTATTTTCATAAAAATGCGCCTCAAATATATAATGTACA
AAAA
Length of 3' end seq. 594
Connected seq. ID SLF208P
Connected seq.
>SLF208P.Seq
CAATATTATTATATTTATTAAATATTACAACTGCGCAAAAGCCAGTGTCAATAAATATAA
AGATATTTGATCAATTACCTTTATATAATGATAATTTTGGTTCACAATCAAGAGCAGCAA
CCATTAAGAGTATGGTTGCAACATCATTAAATACAACATTTAAAACTCCAAGTTTAGGAT
CAGCCACCTCAAGCTTACCATCACCACAATTATTCCAATATTGG----------TGGTTG
TAATGCAACTCAACGTGTTTGTCCAAACTCTGGTGCTTGTAAAATTGGTTATTGTGAACC
TGGTTTCGGTTGTAAATTAAAGGATAGAGTTTGTTCTTCCGATTGGTATTGTATTGAAGC
TCAATGTGATGCAAAATATGGTTGCATTCAATTCGATAGAAGATGTGCTCCTGATAATAG
TAAATGTCAAGAAGGTGTCTGTGTAAACAATACTGCTATCGGTAAAAATGATGGAAAATG
TATTTCTGAAGATTATGATCCAAAACCATTTGTTTGTCAAAAAGCTGCTTTAGTTTCAAC
TGCTGTTATTGCAAGTGTTGTTGTAGTTGGTGCTGTTGTTTTAGGTGCTGCTATATTTGC
GGGTAAGAAAGGTTATGATGCTTGGAAAACAAGTCAAGGAAATGTTATGGCAGCTTCACA
AGCTAATCCATTATATACTCAATCAAGTAATGGAGGTGAAAATCCACTCTATAACTCACC
AACATAAATCCAAAAACCTAATTTATAAAATCATGTATTGTTTTAATTTTAATTTTTTTC
CAGTCTTATTTTCATAAAAATGCGCCTCAAATATATAATGTACAAAAA
Length of connected seq. 818
Full length Seq ID -
Full length Seq. -
Length of full length seq. -