SLF205
Library SL
(Link to library)
Clone ID SLF205
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16054-1
Original site URL
Representative seq. ID SLF205Z
(Link to Original site)
Representative DNA sequence
>SLF205 (SLF205Q) /CSM/SL/SLF2-A/SLF205Q.Seq.d/
XXXXXXXXXXTTAACCCTCGACGAAGGTACATACATTGTCATTCCATCAACTTATGATCA
TGGTATCGAAGGTGCTTTCCATTTAACACTTTTCACCGATGATAAGAATGCCACCTTCCA
ACCATTAACAAACGCTTTCCAAGAGGTTGAACAAGTTAAAGGTACTTGGGTTGGTAAATC
TGCTGGTGGTTCTCCAAATCAACCAACTTTCTTCAATAATCCACAATTCCATTTGAAAGT
ACCTGCCTCTGATAAAGATGAAGTCATCGCCGTTCAATTGATTCAAGATTCAACCATTGC
CGATGAAGGTATTGGTTTCATTGTTTTATCTCGTGATTCTCATTCTGAACCATTGACTGC
TCAAGATTTCCAAAATGAAATGGTTTTCACTAAAACTTCAAATTGGGAAAAGAGAAATGA
TATCGTTTGTCGTCTTCATGTTAAACCAGAGAACACCAAGAGAATTCACTATCATTCCTT
CAACTTTTGATCCAAGTGTTAATCGTTCATTCAAACTTCAAGTTTATTCTGATGTTTCAA
TTTCATTAGATGAAATTGAACAAAAAGATGAATCCTCTGATTCTGAACAAAATGATGATT
sequence update 1999. 7.15
Translated Amino Acid sequence
---TLDEGTYIVIPSTYDHGIEGAFHLTLFTDDKNATFQPLTNAFQEVEQVKGTWVGKSA
GGSPNQPTFFNNPQFHLKVPASDKDEVIAVQLIQDSTIADEGIGFIVLSRDSHSEPLTAQ
DFQNEMVFTKTSNWEKRNDIVCRLHVKPENTKRIHYHSFNF*skc*sfiqtsslf*cfnf
ir*n*tkr*il*f*tk**


Translated Amino Acid sequence (All Frames)
Frame A:
---*pstkvhtlsfhqlmimvskvlsi*hfspmirmppsnh*qtlskrlnklkvlglvnl
lvvlqinqlssiihnsi*kylplikmksspfn*fkiqplpmkvlvslfylvililnh*ll
kiskmkwfslklqigkremisfvvfmlnqrtpreftiipstfdpsvnrsfklqvysdvsi
sldeieqkdessdseqndd


Frame B:
---nprrryihchsinl*swyrrcfpfntfhr**echlptinkrfprg*ts*rylgw*ic
wwfskstnflq*stipfestcl**r*shrrsidsrfnhcr*rywfhcfis*fsf*tidcs
rfpk*ngfh*nfklgkek*yrlsssc*trehqenslsflqlliqvlivhsnfkfilmfqf
h*mklnkkmnplilnkmmi


Frame C:
---TLDEGTYIVIPSTYDHGIEGAFHLTLFTDDKNATFQPLTNAFQEVEQVKGTWVGKSA
GGSPNQPTFFNNPQFHLKVPASDKDEVIAVQLIQDSTIADEGIGFIVLSRDSHSEPLTAQ
DFQNEMVFTKTSNWEKRNDIVCRLHVKPENTKRIHYHSFNF*skc*sfiqtsslf*cfnf
ir*n*tkr*il*f*tk**


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLF205 (SLF205Q) /CSM/SL/SLF2-A/SLF205Q.Seq.d/ 1170 0.0
SLC787 (SLC787Q) /CSM/SL/SLC7-D/SLC787Q.Seq.d/ 1146 0.0
SSC516 (SSC516Q) /CSM/SS/SSC5-A/SSC516Q.Seq.d/ 1130 0.0
VFL249 (VFL249Q) /CSM/VF/VFL2-C/VFL249Q.Seq.d/ 1047 0.0
SFH493 (SFH493Q) /CSM/SF/SFH4-D/SFH493Q.Seq.d/ 1025 0.0
VHL339 (VHL339Q) /CSM/VH/VHL3-B/VHL339Q.Seq.d/ 1003 0.0
SLC473 (SLC473Q) /CSM/SL/SLC4-D/SLC473Q.Seq.d/ 743 0.0
VFO135 (VFO135Q) /CSM/VF/VFO1-B/VFO135Q.Seq.d/ 40 0.038
VFM323 (VFM323Q) /CSM/VF/VFM3-A/VFM323Q.Seq.d/ 40 0.038
VFK711 (VFK711Q) /CSM/VF/VFK7-A/VFK711Q.Seq.d/ 40 0.038

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF525418|AF525418.1 Dictyostelium discoideum calpain-like cysteine protease (cplA) mRNA, complete cds. 872 0.0 2
BQ667603|BQ667603.1 pb55h10.y1 Anc caninum L3 serum stim pAMP1 v1 Chiapelli McCarter Ancylostoma caninum cDNA 5' similar to TR:O18000 O18000 R11H6.1 PROTEIN. [1] ;contains Alu repetitive element;, mRNA sequence. 44 0.025 2
BP025179|BP025179.1 Ciona intestinalis cDNA, clone:cits36j01, 5' end, single read. 34 0.68 2
AJ494199|AJ494199.1 Ciona intestinalis EST, clone CION00699. 34 0.70 2
AV971191|AV971191.1 Ciona intestinalis cDNA, clone:cicl21d17, 5' end, single read. 34 1.0 2
AC022682|AC022682.4 Mus musculus clone RP23-476E21, WORKING DRAFT SEQUENCE, 10 unordered pieces. 46 1.1 4
AV955504|AV955504.1 Ciona intestinalis cDNA, clone:cieg08i12, 5' end, single read. 34 1.1 2
BW143431|BW143431.1 Ciona intestinalis cDNA, clone:rcign065a10, 3' end, single read. 34 1.1 2
BW273101|BW273101.1 Ciona intestinalis cDNA, clone:cign065a10, 5' end, single read. 34 1.1 2
AV672888|AV672888.1 Ciona intestinalis cDNA clone:citb6m20 : 5' end, single read. 34 1.2 2
dna update 2003. 6.28
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

EU328307_1(EU328307|pid:none) Sus scrofa ussuricus calpain 10 is... 44 0.004
DQ647669_1(DQ647669|pid:none) Sus scrofa domestica calpain 10 tr... 44 0.004
EU328308_1(EU328308|pid:none) Sus scrofa ussuricus calpain 10 is... 44 0.004
(Q95LP4) RecName: Full=Calpain-10; EC=3.4.22.-; AltName... 41 0.009
(Q9HC91) RecName: Full=Calpain-10; EC=3.4.22.-; AltName... 42 0.012
AK074807_1(AK074807|pid:none) Homo sapiens cDNA FLJ90326 fis, cl... 42 0.016
AK170034_1(AK170034|pid:none) Mus musculus NOD-derived CD11c +ve... 34 0.020
AK155179_1(AK155179|pid:none) Mus musculus NOD-derived CD11c +ve... 34 0.020
A91671_1(A91671|pid:none) Sequence 3 from Patent WO9824916. 34 0.034
(Q8R4C0) RecName: Full=Calpain-5; EC=3.4.22.-; &AF4849... 30 0.056
protein update 2009. 4.18
PSORT

psg: 0.75 gvh: 0.43 alm: 0.44 top: 0.53 tms: 0.00 mit: 0.23 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: cytoplasmic
20.0 %: nuclear
12.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for SLF205 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLF205Z
3' end seq.
>SLF205Z.Seq
----------TTAACCCTCGACGAAGGTACATACATTGTCATTCCATCAACTTATGATCA
TGGTATCGAAGGTGCTTTCCATTTAACACTTTTCACCGATGATAAGAATGCCACCTTCCA
ACCATTAACAAACGCTTTCCAAGAGGTTGAACAAGTTAAAGGTACTTGGGTTGGTAAATC
TGCTGGTGGTTCTCCAAATCAACCAACTTTCTTCAATAATCCACAATTCCATTTGAAAGT
ACCTGCCTCTGATAAAGATGAAGTCATCGCCGTTCAATTGATTCAAGATTCAACCATTGC
CGATGAAGGTATTGGTTTCATTGTTTTATCTCGTGATTCTCATTCTGAACCATTGACTGC
TCAAGATTTCCAAAATGAAATGGTTTTCACTAAAACTTCAAATTGGGAAAAGAGAAATGA
TATCGTTTGTCGTCTTCATGTTAAACCAGAGAACACCAAGAGAATTCACTATCATTCCTT
CAACTTTTGATCCAAGTGTTAATCGTTCATTCAAACTTCAAGTTTATTCTGATGTTTCAA
TTTCATTAGATGAAATTGAACAAAAAGATGAATCCTCTGATTCTGAACAAAATGATGATT
Length of 3' end seq. 590
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -