NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLF193
Library SL
(Link to library)
Clone ID SLF193
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15976-1|Contig-U16272-1
Original site URL
Representative seq. ID SLF193P
(Link to Original site)
Representative DNA sequence 
>SLF193 (SLF193Q) /CSM/SL/SLF1-D/SLF193Q.Seq.d/
CGGACGCGTGGGTTTTGTTTTTTTTTTTTTATATATTTAAAAAAAAAAGATAATATTTAT
TTAAATTATATCAAACCTTTTTTTTTTTTTTTTTTTTTTTAATAANCAAAATAAATAAAT
AAAAAAATAAAAAAAAAATAAAAAAAATAAAAAAATGAGTGXXXXXXXXXXGGGGGNNGN
GGGGGGGGNGNNCGTGNGNNGGNGNGNGGGTTTGGGNGGGTNNGCNGCGGGNTNTNGGGG
NGGGTTGGTGGGGGNNNGGGNAGGNNGGGGNGGGGGCTTTTTTTGTGNNNCNNNCNGCGN
TGCNCNGNTNTNNCATTTNNGGGNCNNCANGGTTTTCCCCCCCCCCCCCCCCCCNNGGNT
TTNTTTTTNAATTTTTNTTNNTTTTTTTTTTTNANTNTTNNTNNTTTTTTTTNNNAAAAA
AAAAAAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
NCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGCGGGCCCGCTTCTAGAGG
GATCCCAAGCTTACGTACGCGGNCCATGCG
sequence update 2001.10.25
Translated Amino Acid sequence 
grvgfvffflyi*kkkiifi*iisnlfffffffnxqnk*ikk*KKNKKNKKMS---

---GXXGGXXVXXXXGLGGXAAGXXGGLVGXXXGXGGGFFCXXXXXAXXXHXXXXXVFPP
PPPPXXXFXIFXXFFFXXXXXFFXKKKKXKKKKKKKKKKKKKKKKXPKKKKKKKKKKKRG
GPASRGIPSLRTRXM
Translated Amino Acid sequence (All Frames) 
Frame A:
rtrgfcffffiylkkkdniylnyikpfffffff**xk*inkkikkk*kk*kne---

---ggxgggxrxxxxgfgxvxxgxxgxvgggxgrxgxglflxxxxrcxxxxfxgxxgfpp
ppppxxxfxnfxxfffxxxxxffxxkkkxkkkkkkkkkkkkkkkkkxkkkkkkkkkkkkg
rarf*rdpkltyaxha

Frame B:
grvgfvffflyi*kkkiifi*iisnlfffffffnxqnk*ikk*KKNKKNKKMS---

---GXXGGXXVXXXXGLGGXAAGXXGGLVGXXXGXGGGFFCXXXXXAXXXHXXXXXVFPP
PPPPXXXFXIFXXFFFXXXXXFFXKKKKXKKKKKKKKKKKKKKKKXPKKKKKKKKKKKRG
GPASRGIPSLRTRXM

Frame C:
dawvlffffyifkkkr*ylfklyqtffffffflixkink*knkkkikkikk*v---

---gxxggxxxxgxxvwxgxxrxxgxgwwgxgxxgxgaffvxxxaxxxxxixgxxxfspp
pppxgfxfxfxxxfffxxxxffxxkkkxkkkkkkkkkkkkkkkkkxqkkkkkkkkkkkga
gpllegsqayvrgpc
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLF193 (SLF193Q) /CSM/SL/SLF1-D/SLF193Q.Seq.d/                         98   2e-19
SLD841 (SLD841Q) /CSM/SL/SLD8-B/SLD841Q.Seq.d/                         44   0.002
VHK163 (VHK163Q) /CSM/VH/VHK1-C/VHK163Q.Seq.d/                         40   0.036
VFM760 (VFM760Q) /CSM/VF/VFM7-C/VFM760Q.Seq.d/                         40   0.036
SSK819 (SSK819Q) /CSM/SS/SSK8-A/SSK819Q.Seq.d/                         40   0.036
SLJ509 (SLJ509Q) /CSM/SL/SLJ5-A/SLJ509Q.Seq.d/                         40   0.036
SLH579 (SLH579Q) /CSM/SL/SLH5-D/SLH579Q.Seq.d/                         40   0.036
SLH356 (SLH356Q) /CSM/SL/SLH3-C/SLH356Q.Seq.d/                         40   0.036
SLG317 (SLG317Q) /CSM/SL/SLG3-A/SLG317Q.Seq.d/                         40   0.036
SLF535 (SLF535Q) /CSM/SL/SLF5-B/SLF535Q.Seq.d/                         40   0.036
own update 2004. 8.26
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CA087937|CA087937.1 SCQSAM2100D11.g AM2 Saccharum officinarum cDNA clone SCQSAM2100D115', mRNA sequence.    60   4e-05  1
AZ147063|AZ147063.1 SP_0030_B1_G12_SP6E Strongylocentrotus purpuratus, purple sea urchin, sperm genomic BAC library Strongylocentrotus purpuratus genomic clone Plate=30 Col=23 Row=N, DNA sequence.    38   0.007  2
AJ289908|AJ289908.1 Pauesia ahtanumensis partial ef-1alpha gene elongation factor-1  alpha, population 1.    52   0.009  1
BX167301|BX167301.1 Danio rerio genomic clone DKEY-148D17, genomic survey sequence.    52   0.009  1
BZ429473|BZ429473.1 BONOO12TF BO_1.6_2_KB_tot Brassica oleracea genomic clone BONOO12, DNA sequence.    38   0.018  2
CF580775|CF580775.1 AGENCOURT_11361575_updated NIH_MGC_137 Mus musculus cDNA clone IMAGE:6433745 5', mRNA sequence.    50   0.034  1
BP516433|BP516433.1 Hydra magnipapillata cDNA, clone:hmp_12853.    50   0.034  1
BG067530|BG067530.2 H3055D09-3 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3055D09 3', mRNA sequence.    38   0.044  2
Z98551|Z98551.1 Plasmodium falciparum MAL3P6.                      36   0.045  5
CE588795|CE588795.1 tigr-gss-dog-17000366371994 Dog Library Canis familiaris genomic, genomic survey sequence.    46   0.048  2
dna update 2004. 1. 9
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001328_221(CP001328|pid:none) Micromonas sp. RCC299 chromosome...    41   0.019
AJ429230_1(AJ429230|pid:none) Volvox carteri f. nagariensis mRNA...    40   0.043
EU746939_1(EU746939|pid:none) Acidithiobacillus thiooxidans TonB...    39   0.095
CR954213_137(CR954213|pid:none) Ostreococcus tauri strain OTTH05...    39   0.095
DQ196107_1(DQ196107|pid:none) Chlamydomonas reinhardtii pheropho...    39   0.12
CP000930_627(CP000930|pid:none) Heliobacterium modesticaldum Ice...    39   0.12
CP000593_126(CP000593|pid:none) Ostreococcus lucimarinus CCE9901...    39   0.12
EU780426_2(EU780426|pid:none) Spodoptera litura nucleopolyhedrov...    39   0.12
AJ242540_1(AJ242540|pid:none) Volvox carteri mRNA for hydroxypro...    38   0.16
T10798(T10798) pherophorin-S - Volvox carteri  &Y07752_1(Y07752|...    38   0.16
protein update 2009. 6. 3
PSORT 

 psg: 0.75  gvh: 0.55  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 2.80  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 68.0 %: nuclear
	 16.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for SLF193 is nuc
5' end seq. ID SLF193F
5' end seq. 
>SLF193F.Seq
CGGACGCGTGGGTTTTGTTTTTTTTTTTTTATATATTTAAAAAAAAAAGATAATATTTAT
TTAAATTATATCAAACCTTTTTTTTTTTTTTTTTTTTTTTAATAANCAAAATAAATAAAT
AAAAAAATAAAAAAAAAATAAAAAAAATAAAAAAATGAGTG----------
Length of 5' end seq. 161
3' end seq. ID SLF193Z
3' end seq. 
>SLF193Z.Seq
----------NGGGGGNNGNGGGGGGGGNGNNCGTGNGNNGGNGNGNGGGTTTGGGNGGG
TNNGCNGCGGGNTNTNGGGGNGGGTTGGTGGGGGNNNGGGNAGGNNGGGGNGGGGGCTTT
TTTTGTGNNNCNNNCNGCGNTGCNCNGNTNTNNCATTTNNGGGNCNNCANGGTTTTCCCC
CCCCCCCCCCCCCCNNGGNTTTNTTTTTNAATTTTTNTTNNTTTTTTTTTTTNANTNTTN
NTNNTTTTTTTTNNNAAAAAAAAAAAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAANCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGG
GGCGGGCCCGCTTCTAGAGGGATCCCAAGCTTACGTACGCGGNCCATGCG
Length of 3' end seq. 400
Connected seq. ID SLF193P
Connected seq. 
>SLF193P.Seq
CGGACGCGTGGGTTTTGTTTTTTTTTTTTTATATATTTAAAAAAAAAAGATAATATTTAT
TTAAATTATATCAAACCTTTTTTTTTTTTTTTTTTTTTTTAATAANCAAAATAAATAAAT
AAAAAAATAAAAAAAAAATAAAAAAAATAAAAAAATGAGTG----------GGGGGNNGN
GGGGGGGGNGNNCGTGNGNNGGNGNGNGGGTTTGGGNGGGTNNGCNGCGGGNTNTNGGGG
NGGGTTGGTGGGGGNNNGGGNAGGNNGGGGNGGGGGCTTTTTTTGTGNNNCNNNCNGCGN
TGCNCNGNTNTNNCATTTNNGGGNCNNCANGGTTTTCCCCCCCCCCCCCCCCCCNNGGNT
TTNTTTTTNAATTTTTNTTNNTTTTTTTTTTTNANTNTTNNTNNTTTTTTTTNNNAAAAA
AAAAAAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
NCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGCGGGCCCGCTTCTAGAGG
GATCCCAAGCTTACGTACGCGGNCCATGCG
Length of connected seq. 560
Full length Seq ID -
Full length Seq. -
Length of full length seq. -