SLF185
Library SL
(Link to library)
Clone ID SLF185
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15333-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>SLF185 (SLF185Q) /CSM/SL/SLF1-D/SLF185Q.Seq.d/
XXXXXXXXXXCTCTGTCAAAGCCTTAGAGATCCCATGTGATATCTTAATCCCAGCTGCCC
TCGAAAATCAAATCCACATTGGTAACGTCGCCGATATTCAAGCTAAATTAATTGGTGAAG
CTGCCAACGGTCCAATGACCCCACGTGCTGACCAAATCCTCCTCAATAGAGGTCATGTCA
TCATTCCAGATCTCCTCTTAAATGCTGGTGGTGTCACTGTATCATACTTTGAATGGTTAA
AGAATCTTTCTCACGTTCGTTTCGGTCGTTTGAACAAGAAATGGGAAGAATCCTCAAAGA
AATTATTATTAGAATTTGTTGAATCAACCGTCAACAAGAAATTATCAGAAGCTGAAAGAA
GCTTAATCATCCATGGTGCTGATGAAATCGATATCGTTCGTTCAGGTCTCGAAGATACCA
TGCAAAATGCTTGTGCTGAAACCAGAAAGACTGCAAATGAAAAGAACACTGATTACCGTT
CTGCCGCTTTATACAATGCTATCATGAAGATTAAAGCTGTCTATGAATCATCTGGTAATG
TCTTCTCTTAAATATTTTAAAAAAACCCTTTTAAGTTACGC
sequence update 1999. 7.15
Translated Amino Acid sequence
---SVKALEIPCDILIPAALENQIHIGNVADIQAKLIGEAANGPMTPRADQILLNRGHVI
IPDLLLNAGGVTVSYFEWLKNLSHVRFGRLNKKWEESSKKLLLEFVESTVNKKLSEAERS
LIIHGADEIDIVRSGLEDTMQNACAETRKTANEKNTDYRSAALYNAIMKIKAVYESSGNV
FS*if*knpfklr


Translated Amino Acid sequence (All Frames)
Frame A:
---SVKALEIPCDILIPAALENQIHIGNVADIQAKLIGEAANGPMTPRADQILLNRGHVI
IPDLLLNAGGVTVSYFEWLKNLSHVRFGRLNKKWEESSKKLLLEFVESTVNKKLSEAERS
LIIHGADEIDIVRSGLEDTMQNACAETRKTANEKNTDYRSAALYNAIMKIKAVYESSGNV
FS*if*knpfklr


Frame B:
---lskp*rshvis*sqlpskikstlvtspifkln*lvklptvq*phvltksssievmss
fqiss*mlvvslyhtlng*rifltfvsvv*trngknpqrnyy*nllnqpstrnyqklkea
*ssmvlmksisfvqvskipckmlvlkperlqmkrtlitvlplytmls*rlklsmnhlvms
slkyfkktllsy


Frame C:
---cqslrdpm*ylnpscprksnphw*rrryss*inw*scqrsndptc*pnppq*rschh
srsplkcwwchciil*mvkesfsrsfrsfeqemgrilkeiiiric*inrqqeiirs*kkl
nhpwc**nryrsfrsrryhakclc*nqkdck*keh*lpfcrfiqcyhed*scl*iiw*cl
llnilkkpf*vt


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLF185 (SLF185Q) /CSM/SL/SLF1-D/SLF185Q.Seq.d/ 1090 0.0
SLG792 (SLG792Q) /CSM/SL/SLG7-D/SLG792Q.Seq.d/ 1082 0.0
SLG743 (SLG743Q) /CSM/SL/SLG7-B/SLG743Q.Seq.d/ 1082 0.0
SLE716 (SLE716Q) /CSM/SL/SLE7-A/SLE716Q.Seq.d/ 1082 0.0
VFG155 (VFG155Q) /CSM/VF/VFG1-C/VFG155Q.Seq.d/ 1078 0.0
SFB160 (SFB160Q) /CSM/SF/SFB1-C/SFB160Q.Seq.d/ 1078 0.0
CFF488 (CFF488Q) /CSM/CF/CFF4-D/CFF488Q.Seq.d/ 1078 0.0
CFE718 (CFE718Q) /CSM/CF/CFE7-A/CFE718Q.Seq.d/ 1078 0.0
AFN728 (AFN728Q) /CSM/AF/AFN7-B/AFN728Q.Seq.d/ 1078 0.0
AFA817 (AFA817Q) /CSM/AF/AFA8-A/AFA817Q.Seq.d/ 1078 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BI743882|BI743882.1 kx42b07.y1 Parastrongyloides trichosuri FL pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to TR:Q23621 Q23621 ZK829.4 PROTEIN. [1] ;, mRNA sequence. 62 6e-10 2
BI863680|BI863680.1 kx47b05.y1 Parastrongyloides trichosuri FL pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to TR:Q23621 Q23621 ZK829.4 PROTEIN. [1] ;, mRNA sequence. 62 6e-10 2
X76927|X76927.1 M.musculus pseudogene for murine glutamate dehydrogenase. 50 0.030 1
BU319834|BU319834.1 603853711F1 CSEQCHN62 Gallus gallus cDNA clone ChEST854e4 5', mRNA sequence. 50 0.030 1
M17697|M17697.1 Human glutamate dehydrogenase mRNA. 50 0.030 1
BU113431|BU113431.1 603130557F1 CSEQCHL14 Gallus gallus cDNA clone ChEST106b16 5', mRNA sequence. 48 0.12 1
BU250791|BU250791.1 603404370F1 CSEQCHN35 Gallus gallus cDNA clone ChEST304k17 5', mRNA sequence. 48 0.12 1
BU393015|BU393015.1 603806218F1 CSEQCHN57 Gallus gallus cDNA clone ChEST785d6 5', mRNA sequence. 48 0.12 1
CD737087|CD737087.1 4021176 1GAL - Chicken Intestinal Lymphocyte Gallus gallus cDNA clone 1GAL_45D02 5', mRNA sequence. 48 0.12 1
BU458970|BU458970.1 603269548F1 CSEQRBN19 Gallus gallus cDNA clone ChEST243o12 5', mRNA sequence. 48 0.12 1
dna update 2003. 7.14
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54KB7) RecName: Full=Glutamate dehydrogenase, mitochondrial; ... 306 3e-82
CP000159_2202(CP000159|pid:none) Salinibacter ruber DSM 13855, c... 152 8e-36
CP000362_1668(CP000362|pid:none) Roseobacter denitrificans OCh 1... 150 2e-35
CP000084_1170(CP000084|pid:none) Candidatus Pelagibacter ubique ... 145 6e-34
CP001339_1829(CP001339|pid:none) Thioalkalivibrio sp. HL-EbGR7, ... 143 4e-33
CP000264_3440(CP000264|pid:none) Jannaschia sp. CCS1, complete g... 142 6e-33
BC084455_1(BC084455|pid:none) Xenopus tropicalis glutamate dehyd... 141 1e-32
BT072604_1(BT072604|pid:none) Salmo salar clone ssal-rgf-532-071... 141 1e-32
BT059207_1(BT059207|pid:none) Salmo salar clone ssal-rgf-532-192... 141 1e-32
BT044837_1(BT044837|pid:none) Salmo salar clone ssal-rgf-505-100... 141 1e-32
protein update 2009. 4.18
PSORT

psg: 0.75 gvh: 0.30 alm: 0.39 top: 0.53 tms: 0.00 mit: 0.19 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
36.0 %: nuclear
4.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for SLF185 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLF185Z
3' end seq.
>SLF185Z.Seq
----------CTCTGTCAAAGCCTTAGAGATCCCATGTGATATCTTAATCCCAGCTGCCC
TCGAAAAtCAAATCCACATTGGTAACGTCGCCGATATTCAAGCTAAATTAATTGGTGAAG
CTGCCAACGGTCCAATGACCCCACGTGCTGACCAAATCCTCCTCAATAGAGGTCATGTCA
TCATTCCAGATCTCCTCTTAAATGCTGGTGGTGTCACTGTATCATACTTTGAATGGTTAA
AGAATCTTTCTCACGTTCGTTTCGGTCGTTTGAACAAGAAATGGGAAGAATCCTCAAAGA
AATTATTATTAGAATTTGTTGAATCAACCGTCAACAAGAAATTATCAGAAGCTGAAAGAA
GCTTAATCATCCATGGTGCTGATGAAATCGATATCGTTCGTTCAGGTCTCGAAGATACCA
TGCAAAATGCTTGTGCTGAAACCAGAAAGACTGCAAATGAAAAGAACACTGATTACCGTT
CTGCCGCTTTATACAATGCTATCATGAAGATTAAAGCTGTCTATGAATCATCTGGTAATG
TCTTCTCTTAAATATTTTAAAAAAACCCTTTTAAGTTACGC
Length of 3' end seq. 571
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -