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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLF169
Library SL
(Link to library)
Clone ID SLF169
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16249-1
Original site URL
Representative seq. ID SLF169P
(Link to Original site)
Representative DNA sequence 
>SLF169 (SLF169Q) /CSM/SL/SLF1-C/SLF169Q.Seq.d/
AAACAAATAAACAAACAAAGCAAACAGACAATATATAAAATAAATAAATAAAATTTTATA
TAAATAAATAAAAAAAATGATAAAATTATTTTGTATATCAGCAATATTGTTTATATTCAT
TTTTTCACTTGGTGAAAGTACATTGATTAGACCAAATTTTTATTATAGAATTGATTGGGA
AAACATAAATTGTATTAGAGCTCCATGTCCACAATATTCAGCACAAAAAGTCAATACAAA
TGAAAATTCAACTGCAATTTTAAGTTTCATTTACCCAGATGGCTATAATAAATCATACCT
TTTTTCTXXXXXXXXXXAACTGATAAATATTATATTTTTGGTGATAATGGTGTCAGATGT
GTCACTACCCCATGTGCATCAACAGATGCAGTTTTATTGAATATCCGTACTAAACAAACT
GTTAGTGATATACTCATGCCATATTCAAAGAACGTTGGTAAATATTTTGATTCTGCATGG
TTAGGATCTAAAACAGTTAGATCAGATGACTATGGTTTAATCGGTCAAGGTACATTCAGT
AGTGGAAAAATTACAATATCAAATGCTTTCATTCATTTACCAGATCCAATTGGTAAATGT
GATTCATTGCCATTATTAAAATGTCCAGGTGGTTCGATTATGACATACTCTCGTAATGAA
AATCGTTGTTTAGCTTCTCCAACTTGCACTCAATCTTCATTCTGTACCTTGGGTATGCCA
CTTTGTCCAGCAGGTTATCGTTTAGATCAATTCAGAGCAACTGAAGCAAATGGATGTCCA
AAATATTATTGTGATCCAACCTTTGTTTGTAAAACACATTAATTTCTTTTTTTGTTAATT
TTCTAAACAATTGT
sequence update 1999. 2.12
Translated Amino Acid sequence 
nk*tnkanrqyik*inkilyk*IKKMIKLFCISAILFIFIFSLGESTLIRPNFYYRIDWE
NINCIRAPCPQYSAQKVNTNENSTAILSFIYPDGYNKSYLFS---

---TDKYYIFGDNGVRCVTTPCASTDAVLLNIRTKQTVSDILMPYSKNVGKYFDSAWLGS
KTVRSDDYGLIGQGTFSSGKITISNAFIHLPDPIGKCDSLPLLKCPGGSIMTYSRNENRC
LASPTCTQSSFCTLGMPLCPAGYRLDQFRATEANGCPKYYCDPTFVCKTH*flfllif*t
i
Translated Amino Acid sequence (All Frames) 
Frame A:
kqinkqskqtiykink*nfi*inkkndkiilyisnivyihfftw*kyid*tkfll*n*lg
khkly*ssmstifstksqyk*kfncnfkfhlprwl**iipff---

---n**ilyfw**wcqmchypmcinrcsfieypy*tnc**ythaifkerw*if*fcmvri
*ns*ir*lwfnrsryiq*wknynikcfhsftrsnw*m*fiaiikmsrwfdydils**ksl
fsfsnlhsifilylgyatlssrlsfrsiqsn*skwmskill*snlcl*ntlisffvnfln
nc

Frame B:
nk*tnkanrqyik*inkilyk*IKKMIKLFCISAILFIFIFSLGESTLIRPNFYYRIDWE
NINCIRAPCPQYSAQKVNTNENSTAILSFIYPDGYNKSYLFS---

---TDKYYIFGDNGVRCVTTPCASTDAVLLNIRTKQTVSDILMPYSKNVGKYFDSAWLGS
KTVRSDDYGLIGQGTFSSGKITISNAFIHLPDPIGKCDSLPLLKCPGGSIMTYSRNENRC
LASPTCTQSSFCTLGMPLCPAGYRLDQFRATEANGCPKYYCDPTFVCKTH*flfllif*t
i

Frame C:
tnkqtkqtdni*nk*ikfyink*kk**nyfvyqqyclysffhlvkvh*ldqifiieligk
t*ivlelhvhniqhkksiqmkiqlqf*vsftqmaiinhtff---

---liniiflvimvsdvslphvhqqmqfy*isvlnkllviyschiqrtlvnililhg*dl
kqldqmtmv*svkvhsvveklqyqmlsfiyqiqlvnvihchy*nvqvvrl*htlvmkivv
*llqlalnlhsvpwvchfvqqviv*inseqlkqmdvqniiviqplfvkhinfffc*fskq
l
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLF169 (SLF169Q) /CSM/SL/SLF1-C/SLF169Q.Seq.d/                       1439   0.0
SSM524 (SSM524Q) /CSM/SS/SSM5-A/SSM524Q.Seq.d/                       1023   0.0
SSM411 (SSM411Q) /CSM/SS/SSM4-A/SSM411Q.Seq.d/                       1023   0.0
SSM285 (SSM285Q) /CSM/SS/SSM2-D/SSM285Q.Seq.d/                       1023   0.0
SSM240 (SSM240Q) /CSM/SS/SSM2-B/SSM240Q.Seq.d/                       1023   0.0
SSK489 (SSK489Q) /CSM/SS/SSK4-D/SSK489Q.Seq.d/                       1023   0.0
SSK447 (SSK447Q) /CSM/SS/SSK4-B/SSK447Q.Seq.d/                       1023   0.0
SSJ893 (SSJ893Q) /CSM/SS/SSJ8-D/SSJ893Q.Seq.d/                       1023   0.0
SSJ224 (SSJ224Q) /CSM/SS/SSJ2-A/SSJ224Q.Seq.d/                       1023   0.0
SSI834 (SSI834Q) /CSM/SS/SSI8-B/SSI834Q.Seq.d/                       1023   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C90263) Dictyostelium discoideum slug cDNA, clone SSI514.       1001   0.0    4
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...   948   0.0    4
(C91939) Dictyostelium discoideum slug cDNA, clone SSC502.       1009   0.0    2
(C91564) Dictyostelium discoideum slug cDNA, clone SSK447.       1009   0.0    2
(C90847) Dictyostelium discoideum slug cDNA, clone SSJ224.       1009   0.0    2
(C92385) Dictyostelium discoideum slug cDNA, clone SSE726.       1009   0.0    2
(C90356) Dictyostelium discoideum slug cDNA, clone SSI294.       1009   0.0    2
(C89699) Dictyostelium discoideum slug cDNA, clone SSG158.       1009   0.0    2
(C89617) Dictyostelium discoideum slug cDNA, clone SSA321.       1009   0.0    2
(AU034814) Dictyostelium discoideum slug cDNA, clone SLE537.     1009   0.0    2
dna update 2009. 5. 4
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116305_115(AC116305|pid:none) Dictyostelium discoideum chromos...   358   2e-97
AC116305_114(AC116305|pid:none) Dictyostelium discoideum chromos...   226   7e-58
AC116305_112(AC116305|pid:none) Dictyostelium discoideum chromos...   157   3e-37
AC116921_3(AC116921|pid:none) Dictyostelium discoideum chromosom...    78   4e-13
BC101017_1(BC101017|pid:none) Homo sapiens chromosome 12 open re...    43   0.011
CP001037_1830(CP001037|pid:none) Nostoc punctiforme PCC 73102, c...    41   0.043
CP000934_2920(CP000934|pid:none) Cellvibrio japonicus Ueda107, c...    38   0.36
AL033501_6(AL033501|pid:none) C.albicans cosmid Ca41C10.  &T1823...    37   0.81
FM992688_766(FM992688|pid:none) Candida dubliniensis CD36 chromo...    35   3.1
AB267386_1(AB267386|pid:none) Nepenthes alata NaTLP1c mRNA for t...    34   5.3
protein update 2009. 6. 3
PSORT 

 psg: 1.01  gvh: 0.58  alm: 0.20  top: 0.27  tms: 0.07  mit: 0.35  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 20.0 %: cytoplasmic
	 16.0 %: mitochondrial
	 16.0 %: nuclear
	 12.0 %: Golgi
	  4.0 %: extracellular, including cell wall
	  4.0 %: plasma membrane

>> prediction for SLF169 is end
5' end seq. ID SLF169F
5' end seq. 
>SLF169F.Seq
AAACAAATAAACAAACAAAGCAAACAGACAATATATAAAATAAATAAATAAAATTTTATA
TAAATAAATAAAAAAAATGATAAAATTATTTTGTATATCAGCAATATTGTTTATATTCAT
TTTTTCACTTGGTGAAAGTACATTGATTAGACCAAATTTTTATTATAGAATTGATTGGGA
AAACATAAATTGTATTAGAGCTCCATGTCCACAATATTCAGCACAAAAAGTCAATACAAA
TGAAAATTCAACTGCAATTTTAAGTTTCATTTACCCAGATGGCTATAATAAATCATACCT
TTTTTCT----------
Length of 5' end seq. 307
3' end seq. ID SLF169Z
3' end seq. 
>SLF169Z.Seq
----------AACTGATAAATATTATATTTTTGGTGATAATGGTGTCAGATGTGTCACTA
CCCCATGTGCATCAACAGATGCAGTTTTATTGAATATCCGTACTAAACAAACTGTTAGTG
ATATACTCATGCCATATTCAAAGAACGTTGGTAAATATTTTGATTCTGCATGGTTAGGAT
CTAAAACAGTTAGATCAGATGACTATGGTTTAATCGGTCAAGGTACATTCAGTAGTGGAA
AAATTACAATATCAAATGCTTTCATTCATTTACCAGATCCAATTGGTAAATGTGATTCAT
TGCCATTATTAAAATGTCCAGGTGGTTCGATTATGACATACTCTCGTAATGAAAATCGTT
GTTTAGCTTCTCCAACTTGCACTCAATCTTCATTCTGTACCTTGGGTATGCCACTTTGTC
CAGCAGGTTATCGTTTAGATCAATTCAGAGCAACTGAAGCAAATGGATGTCCAAAATATT
ATTGTGATCCAACCTTTGTTTGTAAAACACATTAATTTCTTTTTTTGTTAATTTTCTAAA
CAATTGT
Length of 3' end seq. 537
Connected seq. ID SLF169P
Connected seq. 
>SLF169P.Seq
AAACAAATAAACAAACAAAGCAAACAGACAATATATAAAATAAATAAATAAAATTTTATA
TAAATAAATAAAAAAAATGATAAAATTATTTTGTATATCAGCAATATTGTTTATATTCAT
TTTTTCACTTGGTGAAAGTACATTGATTAGACCAAATTTTTATTATAGAATTGATTGGGA
AAACATAAATTGTATTAGAGCTCCATGTCCACAATATTCAGCACAAAAAGTCAATACAAA
TGAAAATTCAACTGCAATTTTAAGTTTCATTTACCCAGATGGCTATAATAAATCATACCT
TTTTTCT----------AACTGATAAATATTATATTTTTGGTGATAATGGTGTCAGATGT
GTCACTACCCCATGTGCATCAACAGATGCAGTTTTATTGAATATCCGTACTAAACAAACT
GTTAGTGATATACTCATGCCATATTCAAAGAACGTTGGTAAATATTTTGATTCTGCATGG
TTAGGATCTAAAACAGTTAGATCAGATGACTATGGTTTAATCGGTCAAGGTACATTCAGT
AGTGGAAAAATTACAATATCAAATGCTTTCATTCATTTACCAGATCCAATTGGTAAATGT
GATTCATTGCCATTATTAAAATGTCCAGGTGGTTCGATTATGACATACTCTCGTAATGAA
AATCGTTGTTTAGCTTCTCCAACTTGCACTCAATCTTCATTCTGTACCTTGGGTATGCCA
CTTTGTCCAGCAGGTTATCGTTTAGATCAATTCAGAGCAACTGAAGCAAATGGATGTCCA
AAATATTATTGTGATCCAACCTTTGTTTGTAAAACACATTAATTTCTTTTTTTGTTAATT
TTCTAAACAATTGT
Length of connected seq. 844
Full length Seq ID -
Full length Seq. -
Length of full length seq. -