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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLF168
Library SL
(Link to library)
Clone ID SLF168
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16368-1
Original site URL
Representative seq. ID SLF168Z
(Link to Original site)
Representative DNA sequence 
>SLF168 (SLF168Q) /CSM/SL/SLF1-C/SLF168Q.Seq.d/
XXXXXXXXXXCTCAACTTGTGCAGAGCTATCATCAGCATGTAATCACGTTGGAATGATTT
GTATTCAAGTACCAAGCAATTGTACCAATACTAGATTCCCATGTTGCCCATCTCATCCAA
TTTGTATTCATCCATCAACTACTGCTGCTTCAACCATTGCAACAACTGCATCAACTGTCG
CAACTACAACCTCTGCAACTACTGCAGGTACAACAACTGGTGGAACTACAACTGGTGGTT
CAACTTCTGATAGTAGTGCTGCTTCCTCAGCCGATAGTAGCGCTGCCTCCTCATCACCAT
CAAGCAGTGCTGCTTCAAGTGCCGCTTCAAGTGAACCATCAAGTAGCGCCGCTTCAAGTA
GTGCTCCATCCTCTGCTTCAAGTAGCGCTCCATCCTCTGCCTCAAGTAGTGCTCCATCAT
CATCAGCTTCAAGTTCAGCTGCATCATCAGCTGCAAGCTCAGAAAGCTCAGAAAGCTCAT
CAGCCACTTCATAAATAAAACTTTGATCAAAAAA
sequence update 1999. 7.15
Translated Amino Acid sequence 
---STCAELSSACNHVGMICIQVPSNCTNTRFPCCPSHPICIHPSTTAASTIATTASTVA
TTTSATTAGTTTGGTTTGGSTSDSSAASSADSSAASSSPSSSAASSAASSEPSSSAASSS
APSSASSSAPSSASSSAPSSSASSSAASSAASSESSESSSATS*ikl*sk
Translated Amino Acid sequence (All Frames) 
Frame A:
---STCAELSSACNHVGMICIQVPSNCTNTRFPCCPSHPICIHPSTTAASTIATTASTVA
TTTSATTAGTTTGGTTTGGSTSDSSAASSADSSAASSSPSSSAASSAASSEPSSSAASSS
APSSASSSAPSSASSSAPSSSASSSAASSAASSESSESSSATS*ikl*sk


Frame B:
---qlvqsyhqhvitle*fvfkyqaivpildshvahliqfvfihqllllqplqqlhqlsq
lqplqllqvqqlvelqlvvqllivvllpqpivalpphhhqavllqvplqvnhqvaplqvv
lhpllqvalhplpqvvlhhhqlqvqlhhqlqaqkaqkahqplhk*nfdqk


Frame C:
---nlcraiism*srwndlysstkqlyqy*ipmlpissnlyssinyccfnhcnncincrn
ynlcnycrynnwwnynwwfnf***ccflsr**rcllitikqccfkcrfk*tik*rrfk*c
silcfk*rsilclk*csiiisfkfsciiscklrklrklishfinktlikk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM203 (SSM203Q) /CSM/SS/SSM2-A/SSM203Q.Seq.d/                        999   0.0
SSG603 (SSG603Q) /CSM/SS/SSG6-A/SSG603Q.Seq.d/                        999   0.0
SSG344 (SSG344Q) /CSM/SS/SSG3-B/SSG344Q.Seq.d/                        999   0.0
SLI237 (SLI237Q) /CSM/SL/SLI2-B/SLI237Q.Seq.d/                        999   0.0
SLG857 (SLG857Q) /CSM/SL/SLG8-C/SLG857Q.Seq.d/                        999   0.0
SLG750 (SLG750Q) /CSM/SL/SLG7-C/SLG750Q.Seq.d/                        999   0.0
SLF168 (SLF168Q) /CSM/SL/SLF1-C/SLF168Q.Seq.d/                        999   0.0
SLE334 (SLE334Q) /CSM/SL/SLE3-B/SLE334Q.Seq.d/                        999   0.0
SLE302 (SLE302Q) /CSM/SL/SLE3-A/SLE302Q.Seq.d/                        999   0.0
SLE241 (SLE241Q) /CSM/SL/SLE2-B/SLE241Q.Seq.d/                        999   0.0
own update 2001. 8.27
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

D13973|D13973.1 Dictyostelium discoideum DNA for Dp87 protein, complete cds.   999  0.0  4
BJ170760|BJ170760.1 Physcomitrella patens subsp. patens cDNA clone:pph26m16, 3' end, single read.   190  1e-44  1
BU027396|BU027396.1 QHG5F22.yg.ab1 QH_EFGHJ sunflower RHA280 Helianthus annuus cDNA clone QHG5F22, mRNA sequence.    44  1.6  1
BX284669|BX284669.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-280E18.    44  1.6  1
AE017095|AE017095.1 Oryza sativa (japonica cultivar-group) chromosome 10, section 49 of 77 of the complete sequence.    44  1.6  1
CB670885|CB670885.1 OSJNEe04D05.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA clone OSJNEe04D05 3', mRNA sequence.    44  1.6  1
AU068578|AU068578.1 Oryza sativa cDNA, partial sequence (C30478_11Z).    44  1.6  1
CB645342|CB645342.1 ---.    44  1.6  1
CB628070|CB628070.1 ---.    44  1.6  1
CB682568|CB682568.1 OSJNEf10A23.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA clone OSJNEf10A23 3', mRNA sequence.    44  1.6  1
dna update 2003. 7.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q04503) RecName: Full=Prespore protein Dp87; Flags: Precursor;        66   4e-10
D13973_1(D13973|pid:none) Dictyostelium discoideum gene for Dp87...    66   4e-10
EU247178_1(EU247178|pid:none) Lycosa singoriensis clone LSsin992...    33   3.9
protein update 2008.11.17
PSORT 

 psg: 0.75  gvh: 0.48  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.51  mip: 0.06
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 68.0 %: mitochondrial
	 20.0 %: nuclear
	  8.0 %: cytoplasmic
	  4.0 %: cytoskeletal

>> prediction for SLF168 is mit
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLF168Z
3' end seq. 
>SLF168Z.Seq
----------CTCAACTTGTGCAGAGCTATCATCAGCATGTAATCACGTTGGAATGATTT
GTATTCAAGTACCAAGCAATTGTACCAATACTAGATTCCCATGTTGCCCATCTCATCCAA
TTTGTATTCATCCATCAACTACTGCTGCTTCAACCATTGCAACAACTGCATCAACTGTCG
CAACTACAACCTCTGCAACTACTGCAGGTACAACAACTGGTGGAACTACAACTGGTGGTT
CAACTTCTGATAGTAGTGCTGCTTCCTCAGCCGATAGTAGCGCTGCCTCCTCATCACCAT
CAAGCAGTGCTGCTTCAAGTGCCGCTTCAAGTGAACCATCAAGTAGCGCCGCTTCAAGTA
GTGCTCCATCCTCTGCTTCAAGTAGCGCTCCATCCTCTGCCTCAAGTAGTGCTCCATCAT
CATCAGCTTCAAGTTCAGCTGCATCATCAGCTGCAAGCTCAGAAAGCTCAGAAAGCTCAT
CAGCCACTTCATAAATAAAACTTTGATCAAAAAA
Length of 3' end seq. 504
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -